Distinguishing among complex evolutionary models using unphased whole‐genome data through random forest approximate Bayesian computation

Early human dispersals within the Americas

(2018) J. Víctor Moreno-Mayar et al.   SCIENCE

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice

(2017) Lounès Chikhi et al.   HEREDITY

Efficient Computation of the Joint Sample Frequency Spectra for Multiple Populations

(2017) John A. Kamm et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Demographic model selection using random forests and the site frequency spectrum

(2017) Megan L. Smith et al.   MOLECULAR ECOLOGY

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

(2017) Andrea Benazzo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

(2017) Julien Jouganous et al.   GENETICS

UCSC Data Integrator and Variant Annotation Integrator

(2016) Angie S. Hinrichs et al.   BIOINFORMATICS

A genomic history of Aboriginal Australia

(2016) Anna-Sapfo Malaspinas et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Genomic analyses inform on migration events during the peopling of Eurasia

(2016) Luca Pagani et al.   NATURE

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

Chimpanzee genomic diversity reveals ancient admixture with bonobos

(2016) M. de Manuel et al.   SCIENCE

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

(2016) Simon Boitard et al.   PLoS Genetics

Reliable ABC model choice via random forests

(2015) Pierre Pudlo et al.   BIOINFORMATICS

Can the Site-Frequency Spectrum Distinguish Exponential Population Growth from Multiple-Merger Coalescents?

(2015) B. Eldon et al.   GENETICS

On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?

(2015) O Mazet et al.   HEREDITY

Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum

(2015) Jonathan Terhorst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

ABC inference of multi-population divergence with admixture from unphased population genomic data

(2014) John D. Robinson et al.   MOLECULAR ECOLOGY

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Genomic and cranial phenotype data support multiple modern human dispersals from Africa and a southern route into Asia

(2014) H. Reyes-Centeno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits

(2014) Kirk E. Lohmueller   PLoS Genetics

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

A Comparative Review of Dimension Reduction Methods in Approximate Bayesian Computation

(2013) M. G. B. Blum et al.   STATISTICAL SCIENCE

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Fast Computation and Applications of Genome Mappability

(2012) Thomas Derrien et al.   PLoS One

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The joint allele frequency spectrum of multiple populations: A coalescent theory approach

(2011) Hua Chen   THEORETICAL POPULATION BIOLOGY

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference

(2008) B. R. Morton et al.   PLANT PHYSIOLOGY