Neutral components show a hierarchical community structure in the genotype–phenotype map of RNA secondary structure

Using small samples to estimate neutral component size and robustness in the genotype–phenotype map of RNA secondary structure

(2020) Marcel Weiß et al.   Journal of the Royal Society Interface

The architecture of an empirical genotype-phenotype map

(2018) José Aguilar-Rodríguez et al.   EVOLUTION

On the networked architecture of genotype spaces and its critical effects on molecular evolution

(2018) Jacobo Aguirre et al.   Open Biology

Random walks and diffusion on networks

(2017) Naoki Masuda et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability

(2016) Sam F. Greenbury et al.   PLoS Computational Biology

Dynamical community structure of populations evolving on genotype networks

(2015) José A. Capitán et al.   CHAOS SOLITONS & FRACTALS

The structure of the genotype–phenotype map strongly constrains the evolution of non-coding RNA

(2015) Kamaludin Dingle et al.   Interface Focus

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure

(2014) S. F. Greenbury et al.   Journal of the Royal Society Interface

Evolution on neutral networks accelerates the ticking rate of the molecular clock

(2014) S. Manrubia et al.   Journal of the Royal Society Interface

A Comparison of Genotype-Phenotype Maps for RNA and Proteins

(2012) Evandro Ferrada et al.   BIOPHYSICAL JOURNAL

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Evolutionary dynamics in a simple model of self-assembly

(2011) Iain G. Johnston et al.   PHYSICAL REVIEW E

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

(2011) Jacobo Aguirre et al.   PLoS One

Epistasis can lead to fragmented neutral spaces and contingency in evolution

(2011) S. Schaper et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Neutral network sizes of biological RNA molecules can be computed and are not atypically small

(2008) Thomas Jörg et al.   BMC BIOINFORMATICS

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs

(2008) T. Mituyama et al.   NUCLEIC ACIDS RESEARCH

Robustness and evolvability: a paradox resolved

(2007) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES