TET repression and increased DNMT activity synergistically induce aberrant DNA methylation

MACON: a web tool for computing DNA methylation data obtained by the Illumina Infinium Human DNA methylation BeadArray

(2018) Naoko Iida et al.   Epigenomics

The emerging field of epigenetics in neurodegeneration and neuroprotection

(2017) Jee-Yeon Hwang et al.   NATURE REVIEWS NEUROSCIENCE

Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma

(2017) Apinya Jusakul et al.   Cancer Discovery

High impact of methylation accumulation on metachronous gastric cancer: 5-year follow-up of a multicentre prospective cohort study

(2016) Masahiro Maeda et al.   GUT

The role of diet and exercise in the transgenerational epigenetic landscape of T2DM

(2016) Romain Barrès et al.   Nature Reviews Endocrinology

TET2 functions as a resistance factor against DNA methylation acquisition during Epstein-Barr virus infection

(2016) Hiroe Namba-Fukuyo et al.   Oncotarget

Obesity: An Immunometabolic Perspective

(2016) Indrani Ray et al.   Frontiers in Endocrinology

Identification of coexistence of DNA methylation and H3K27me3 specifically in cancer cells as a promising target for epigenetic therapy

(2014) Hideyuki Takeshima et al.   CARCINOGENESIS

AJAP1 is Dysregulated at an Early Stage of Gliomagenesis and Suppresses Invasion Through Cytoskeleton Reorganization

(2014) Lei Han et al.   CNS Neuroscience & Therapeutics

Integrated analysis of cancer-related pathways affected by genetic and epigenetic alterations in gastric cancer

(2014) Yukie Yoda et al.   Gastric Cancer

Demonstration of the usefulness of epigenetic cancer risk prediction by a multicentre prospective cohort study

(2014) Kiyoshi Asada et al.   GUT

Hepatitis Virus Infection Affects DNA Methylation in Mice With Humanized Livers

(2013) Yasuyuki Okamoto et al.   GASTROENTEROLOGY

DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data

(2013) Ryuichiro Nakato et al.   GENES TO CELLS

Inflammation in neurodegenerative diseases - an update

(2013) Sandra Amor et al.   IMMUNOLOGY

Helicobacter pyloriinduces promoter methylation of E-cadherin via interleukin-1β activation of nitric oxide production in gastric cancer cells

(2012) Fung-Yu Huang et al.   CANCER

Development of a novel approach, the epigenome-based outlier approach, to identify tumor-suppressor genes silenced by aberrant DNA methylation

(2012) Mizuho Kikuyama et al.   CANCER LETTERS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Oxidative Damage Targets Complexes Containing DNA Methyltransferases, SIRT1, and Polycomb Members to Promoter CpG Islands

(2011) Heather M. O'Hagan et al.   CANCER CELL

miR-20a Encoded by the miR-17-92 Cluster Increases the Metastatic Potential of Osteosarcoma Cells by Regulating Fas Expression

(2011) G. Huang et al.   CANCER RESEARCH

Molecular Pathways: Involvement of Helicobacter pylori-Triggered Inflammation in the Formation of an Epigenetic Field Defect, and Its Usefulness as Cancer Risk and Exposure Markers

(2011) T. Ushijima et al.   CLINICAL CANCER RESEARCH

High density DNA methylation array with single CpG site resolution

(2011) Marina Bibikova et al.   GENOMICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Analysis of microRNA turnover in mammalian cells following Dicer1 ablation

(2011) Michael P. Gantier et al.   NUCLEIC ACIDS RESEARCH

Early-stage formation of an epigenetic field defect in a mouse colitis model and non-essential roles of T- and B-cells in DNA methylation induction

(2011) M Katsurano et al.   ONCOGENE

Evaluation of the Infinium Methylation 450K technology

(2011) Sarah Dedeurwaerder et al.   Epigenomics

Inflammatory Processes Triggered by Helicobacter pylori Infection Cause Aberrant DNA Methylation in Gastric Epithelial Cells

(2010) T. Niwa et al.   CANCER RESEARCH

Insufficient role of cell proliferation in aberrant DNA methylation induction and involvement of specific types of inflammation

(2010) Keun Hur et al.   CARCINOGENESIS

Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping

(2010) P.-Y. Hsu et al.   GENOME RESEARCH

Widespread and tissue specific age-related DNA methylation changes in mice

(2010) S. Maegawa et al.   GENOME RESEARCH

Alu and Satα hypomethylation in Helicobacter pylori-infected gastric mucosae

(2010) Takeichi Yoshida et al.   INTERNATIONAL JOURNAL OF CANCER

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

The role of synovitis in pathophysiology and clinical symptoms of osteoarthritis

(2010) Jérémie Sellam et al.   Nature Reviews Rheumatology

The presence of aberrant DNA methylation in noncancerous esophageal mucosae in association with smoking history

(2009) Daiji Oka et al.   CANCER

The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands

(2009) H. Takeshima et al.   GENOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Epithelial Progeny of Estrogen-Exposed Breast Progenitor Cells Display a Cancer-like Methylome

(2008) A. S.L. Cheng et al.   CANCER RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY