Construction of relatedness matrices using genotyping-by-sequencing data

Application of genotyping by sequencing technology to a variety of crop breeding programs

(2016) Changsoo Kim et al.   PLANT SCIENCE

Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing

(2015) Omnia Gamal El-Dien et al.   BMC GENOMICS

Collapsed haplotype pattern method for linkage analysis of next-generation sequence data

(2015) Gao T Wang et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

Genomic Selection for Quantitative Adult Plant Stem Rust Resistance in Wheat

(2015) Jessica E. Rutkoski et al.   Plant Genome

Genotyping by sequencing for genomic prediction in a soybean breeding population

(2014) Diego Jarquín et al.   BMC GENOMICS

Extensive Local Gene Duplication and Functional Divergence among Paralogs in Atlantic Salmon

(2014) Ian A. Warren et al.   Genome Biology and Evolution

Genomic relationships computed from either next-generation sequence or array SNP data

(2014) M. Pérez-Enciso   JOURNAL OF ANIMAL BREEDING AND GENETICS

Using recursion to compute the inverse of the genomic relationship matrix

(2014) I. Misztal et al.   JOURNAL OF DAIRY SCIENCE

A New Genotype Imputation Method with Tolerance to High Missing Rate and Rare Variants

(2014) Yumei Yang et al.   PLoS One

A High Throughput Single Nucleotide Polymorphism Multiplex Assay for Parentage Assignment in New Zealand Sheep

(2014) Shannon M. Clarke et al.   PLoS One

The estimation of genomic relationships using breedwise allele frequencies among animals in multibreed populations

(2013) M.L. Makgahlela et al.   JOURNAL OF DAIRY SCIENCE

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Estimating Kinship in Admixed Populations

(2012) Timothy Thornton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila melanogaster

(2012) Ulrike Ober et al.   PLoS Genetics

Low-coverage sequencing: Implications for design of complex trait association studies

(2011) Y. Li et al.   GENOME RESEARCH

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data

(2010) Ozren Polašek et al.   BMC GENOMICS

Genomic predictions for New Zealand dairy bulls and integration with national genetic evaluation

(2010) B.L. Harris et al.   JOURNAL OF DAIRY SCIENCE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Reconciling the analysis of IBD and IBS in complex trait studies

(2010) Joseph E. Powell et al.   NATURE REVIEWS GENETICS

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

Technical note: Derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit

(2009) I. Strandén et al.   JOURNAL OF DAIRY SCIENCE

Comparison of Mixed-Model Approaches for Association Mapping

(2008) B. Stich et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE