Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing

Regulation of Photosynthetic Electron Transport and Photoinhibition

(2014) Thomas Roach et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

The Chlamydomonas genome project: a decade on

(2014) Ian K. Blaby et al.   TRENDS IN PLANT SCIENCE

Physicochemical Mechanism of Light-Driven DNA Repair by (6-4) Photolyases

(2013) Shirin Faraji et al.   Annual Review of Physical Chemistry

Modeling the effects of light and temperature on algae growth: State of the art and critical assessment for productivity prediction during outdoor cultivation

(2013) Quentin Béchet et al.   BIOTECHNOLOGY ADVANCES

Management of oxidative stress by microalgae

(2013) Judith T. Cirulis et al.   CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY

Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae

(2013) René H Wijffels et al.   CURRENT OPINION IN BIOTECHNOLOGY

Evolution of flexible non-photochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis

(2013) Krishna K Niyogi et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA-seq-based mapping and candidate identification of mutations from forward genetic screens

(2013) A. C. Miller et al.   GENOME RESEARCH

Perspectives for identification of mutations in the zebrafish: Making use of next-generation sequencing technologies for forward genetic approaches

(2013) Katrin Henke et al.   METHODS

Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers

(2013) Karl J V Nordström et al.   NATURE BIOTECHNOLOGY

Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis

(2013) Alexander Maier et al.   PLANT JOURNAL

RNAi Knock-Down of LHCBM1, 2 and 3 Increases Photosynthetic H2 Production Efficiency of the Green Alga Chlamydomonas reinhardtii

(2013) Melanie Oey et al.   PLoS One

Retrograde bilin signaling enablesChlamydomonasgreening and phototrophic survival

(2013) Deqiang Duanmu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole Genome Sequencing Identifies a Deletion in Protein Phosphatase 2A That Affects Its Stability and Localization in Chlamydomonas reinhardtii

(2013) Huawen Lin et al.   PLoS Genetics

Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines

(2013) Robert S. Allen et al.   Frontiers in Plant Science

Genetically Engineered Algae for Biofuels: A Key Role for Ecologists

(2012)   BIOSCIENCE

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Potential for green microalgae to produce hydrogen, pharmaceuticals and other high value products in a combined process

(2012) Kari Skjånes et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Estimate of the Spontaneous Mutation Rate in Chlamydomonas reinhardtii

(2012) Rob W. Ness et al.   GENETICS

Mutation mapping and identification by whole-genome sequencing

(2012) I. Leshchiner et al.   GENOME RESEARCH

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

(2012) Ambrish Roy et al.   NUCLEIC ACIDS RESEARCH

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Modulation of the light-harvesting chlorophyll antenna size in Chlamydomonas reinhardtii by TLA1 gene over-expression and RNA interference

(2012) M. Mitra et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Truncated Photosystem Chlorophyll Antenna Size in the Green Microalga Chlamydomonas reinhardtii upon Deletion of the TLA3-CpSRP43 Gene

(2012) H. Kirst et al.   PLANT PHYSIOLOGY

Fast Isogenic Mapping-by-Sequencing of Ethyl Methanesulfonate-Induced Mutant Bulks

(2012) B. Hartwig et al.   PLANT PHYSIOLOGY

Genome-Wide Characterization of Genetic Variation in the Unicellular, Green Alga Chlamydomonas reinhardtii

(2012) Hyosik Jang et al.   PLoS One

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Whole-Genome Sequencing to Identify Mutants and Polymorphisms in Chlamydomonas reinhardtii

(2012) Susan K. Dutcher et al.   G3-Genes Genomes Genetics

Optimization of photosynthetic light energy utilization by microalgae

(2012) Zoee Perrine et al.   Algal Research-Biomass Biofuels and Bioproducts

Overcoming biological constraints to enable the exploitation of microalgae for biofuels

(2011) John G. Day et al.   BIORESOURCE TECHNOLOGY

Bulk Segregant Analysis Followed by High-Throughput Sequencing Reveals the Neurospora Cell Cycle Gene, ndc-1 , To Be Allelic with the Gene for Ornithine Decarboxylase, spe-1

(2011) Kyle R. Pomraning et al.   EUKARYOTIC CELL

Efficient Mapping and Cloning of Mutations in Zebrafish by Low-Coverage Whole-Genome Sequencing

(2011) M. E. Bowen et al.   GENETICS

AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE)1

(2011) Flavia Vischi Winck et al.   JOURNAL OF PHYCOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Mutagenesis and phenotypic selection as a strategy toward domestication of Chlamydomonas reinhardtii strains for improved performance in photobioreactors

(2011) Giulia Bonente et al.   PHOTOSYNTHESIS RESEARCH

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

Fast-forward genetics enabled by new sequencing technologies

(2011) Korbinian Schneeberger et al.   TRENDS IN PLANT SCIENCE

Analysis of LhcSR3, a Protein Essential for Feedback De-Excitation in the Green Alga Chlamydomonas reinhardtii

(2011) Giulia Bonente et al.   PLOS BIOLOGY

Structure and function of WD40 domain proteins

(2011) Chao Xu et al.   Protein & Cell

Light requirements in microalgal photobioreactors: an overview of biophotonic aspects

(2010) Ana P. Carvalho et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biodiesel from algae: challenges and prospects

(2010) Stuart A Scott et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Strategy for Direct Mapping and Identification of Mutations by Whole-Genome Sequencing

(2010) Steven Zuryn et al.   GENETICS

Microalgae as substrates for fermentative biogas production in a combined biorefinery concept

(2010) J.H. Mussgnug et al.   JOURNAL OF BIOTECHNOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

C. elegans Mutant Identification with a One-Step Whole-Genome-Sequencing and SNP Mapping Strategy

(2010) Maria Doitsidou et al.   PLoS One

WD40 proteins propel cellular networks

(2010) Christian U. Stirnimann et al.   TRENDS IN BIOCHEMICAL SCIENCES

RING Domain E3 Ubiquitin Ligases

(2009) Raymond J. Deshaies et al.   Annual Review of Biochemistry

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Identification of EMS-Induced Mutations in Drosophila melanogaster by Whole-Genome Sequencing

(2009) J. P. Blumenstiel et al.   GENETICS

Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing

(2009) D. V. Irvine et al.   GENOME RESEARCH

Improvement of light to biomass conversion by de-regulation of light-harvesting protein translation in Chlamydomonas reinhardtii

(2009) J. Beckmann et al.   JOURNAL OF BIOTECHNOLOGY

A Proteomic Survey of Chlamydomonas reinhardtii Mitochondria Sheds New Light on the Metabolic Plasticity of the Organelle and on the Nature of the  -Proteobacterial Mitochondrial Ancestor

(2009) A. Atteia et al.   MOLECULAR BIOLOGY AND EVOLUTION

An ancient light-harvesting protein is critical for the regulation of algal photosynthesis

(2009) Graham Peers et al.   NATURE

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

(2009) Korbinian Schneeberger et al.   NATURE METHODS

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Caenorhabditis elegans mutant allele identification by whole-genome sequencing

(2008) Sumeet Sarin et al.   NATURE METHODS