Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

The origin and evolution of synaptic proteins - choanoflagellates lead the way

(2015) P. Burkhardt   JOURNAL OF EXPERIMENTAL BIOLOGY

Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster

(2014) Kristina Krassovsky et al.   BMC GENOMICS

The synaptic proteome

(2014) Melanie Laßek et al.   CELL AND TISSUE RESEARCH

Navigating and mining modENCODE data

(2014) Nathan Boley et al.   METHODS

Differential centrifugation–based biochemical fractionation of the Drosophila adult CNS

(2014) Harald Depner et al.   Nature Protocols

Global Gene Expression Shift during the Transition from Early Neural Development to Late Neuronal Differentiation in Drosophila melanogaster

(2014) Rafael Cantera et al.   PLoS One

Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins

(2014) B. G. Wilhelm et al.   SCIENCE

Coordinated Metabolic Transitions During Drosophila Embryogenesis and the Onset of Aerobic Glycolysis

(2014) Jason M. Tennessen et al.   G3-Genes Genomes Genetics

Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis

(2013) Elodie Darbo et al.   BMC GENOMICS

New Approaches for Studying Synaptic Development, Function, and Plasticity Using Drosophila as a Model System

(2013) C. A. Frank et al.   JOURNAL OF NEUROSCIENCE

metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research

(2013) Mike Lyne et al.   Database-The Journal of Biological Databases and Curation

Prediction of Drosophila melanogaster gene function using Support Vector Machines

(2013) Nicholas Mitsakakis et al.   BioData Mining

Evolution of Synapse Complexity and Diversity

(2012) Richard D. Emes et al.   Annual Review of Neuroscience

SynaptomeDB: an ontology-based knowledgebase for synaptic genes

(2012) Mehdi Pirooznia et al.   BIOINFORMATICS

A large-scale RNAi screen identifies functional classes of genes shaping synaptic development and maintenance

(2012) Vera Valakh et al.   DEVELOPMENTAL BIOLOGY

Studying and modelling dynamic biological processes using time-series gene expression data

(2012) Ziv Bar-Joseph et al.   NATURE REVIEWS GENETICS

Extracellular matrix and its receptors in drosophila neural development

(2011) Kendal Broadie et al.   Developmental Neurobiology

FlyBase 101 - the basics of navigating FlyBase

(2011) P. McQuilton et al.   NUCLEIC ACIDS RESEARCH

Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation

(2011) Claudia C Weber et al.   GENOME BIOLOGY

Temporal waves of coherent gene expression during Drosophila embryogenesis

(2010) Ilya Papatsenko et al.   BIOINFORMATICS

Predicting gene function using hierarchical multi-label decision tree ensembles

(2010) Leander Schietgat et al.   BMC BIOINFORMATICS

Structural and functional plasticity of the cytoplasmic active zone

(2010) Stephan J Sigrist et al.   CURRENT OPINION IN NEUROBIOLOGY

The nonsense-mediated decay pathway maintains synapse architecture and synaptic vesicle cycle efficacy

(2010) A. A. Long et al.   JOURNAL OF CELL SCIENCE

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

A Genome-Wide Gene Function Prediction Resource for Drosophila melanogaster

(2010) Han Yan et al.   PLoS One

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function

(2009) James C Costello et al.   GENOME BIOLOGY

Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster

(2008) Wensheng Zhang et al.   BMC BIOINFORMATICS

Gene function prediction using labeled and unlabeled data

(2008) Xing-Ming Zhao et al.   BMC BIOINFORMATICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH