Populational landscape of INDELs affecting transcription factor-binding sites in humans

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Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y

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Tracing the Evolution of Lineage-Specific Transcription Factor Binding Sites in a Birth-Death Framework

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Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences

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Two Distinct Determinants of Ligand Specificity in T1R1/T1R3 (the Umami Taste Receptor)

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Testing for Natural Selection in Human Exonic Splicing Regulators Associated with Evolutionary Rate Shifts

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Evidence for Polygenic Adaptation to Pathogens in the Human Genome

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Transcriptome and genome sequencing uncovers functional variation in humans

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Genome-wide inference of natural selection on human transcription factor binding sites

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1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

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Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution

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Extensive Variation in Chromatin States Across Humans

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Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

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Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

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Personal and population genomics of human regulatory variation

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

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An expansive human regulatory lexicon encoded in transcription factor footprints

(2012) Shane Neph et al.   NATURE

An integrated map of genetic variation from 1,092 human genomes

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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

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Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death

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Human-specific loss of regulatory DNA and the evolution of human-specific traits

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Three Periods of Regulatory Innovation During Vertebrate Evolution

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Correction: Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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Variation in Transcription Factor Binding Among Humans

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Molecular genetics of human pigmentation diversity

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