Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts

Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis

(2014) Sarah Kopac et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adaptive divergence with gene flow in incipient speciation ofMiscanthus floridulus/sinensiscomplex (Poaceae)

(2014) Chao-Li Huang et al.   PLANT JOURNAL

Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges

(2013) Hanno Schmidt et al.   BMC GENOMICS

Evolutionary History of the Plant Pathogenic Bacterium Xanthomonas axonopodis

(2013) Nadia Mhedbi-Hajri et al.   PLoS One

Shared and distinct mechanisms of iron acquisition by bacterial and fungal pathogens of humans

(2013) Mélissa Caza et al.   Frontiers in Cellular and Infection Microbiology

Genome Sequence of Xanthomonas citri pv. mangiferaeindicae Strain LMG 941

(2012) S. Midha et al.   JOURNAL OF BACTERIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Structural insights into the biogenesis and biofilm formation by the Escherichia coli common pilus

(2012) J. A. Garnett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns of Gene Flow Define Species of Thermophilic Archaea

(2012) Hinsby Cadillo-Quiroz et al.   PLOS BIOLOGY

A large scale comparative genomic analysis reveals insertion sites for newly acquired genomic islands in bacterial genomes

(2011) Pengcheng Du et al.   BMC MICROBIOLOGY

Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity

(2011) Neha Jalan et al.   JOURNAL OF BACTERIOLOGY

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp.

(2011) A. J. Bogdanove et al.   JOURNAL OF BACTERIOLOGY

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Two-component signal transduction as potential drug targets in pathogenic bacteria

(2010) Yasuhiro Gotoh et al.   CURRENT OPINION IN MICROBIOLOGY

Differential expression of pathogenicity- and virulence-related genes of Xanthomonas axonopodis pv. citri under copper stress

(2010) Ana Carolina Basílio Palmieri et al.   GENETICS AND MOLECULAR BIOLOGY

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations

(2010) Brian B Oakley et al.   ISME Journal

Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria

(2010) Robert Szczesny et al.   NEW PHYTOLOGIST

Impact of recombination on bacterial evolution

(2010) Xavier Didelot et al.   TRENDS IN MICROBIOLOGY

A species concept for bacteria based on adaptive divergence

(2010) Michiel Vos   TRENDS IN MICROBIOLOGY

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

(2009) Isabelle Pieretti et al.   BMC GENOMICS

Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence

(2009) Teresa Nogueira et al.   CURRENT BIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The underestimated role of roots in defense against leaf attackers

(2009) Matthias Erb et al.   TRENDS IN PLANT SCIENCE

Pervasive Natural Selection in the Drosophila Genome?

(2009) Guy Sella et al.   PLoS Genetics

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

(2008) Steven L Salzberg et al.   BMC GENOMICS

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

A comparison of homologous recombination rates in bacteria and archaea

(2008) Michiel Vos et al.   ISME Journal

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

(2008) Frank-Jörg Vorhölter et al.   JOURNAL OF BIOTECHNOLOGY

Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation

(2008) J. Mallet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acquisition and Evolution of Plant Pathogenesis–Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas

(2008) Hong Lu et al.   PLoS One

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA

(2008) Luciano A. Marraffini et al.   SCIENCE