Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium

Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies

(2015) Sagar M Utturkar et al.   Scientific Data

Nanopore-based Fourth-generation DNA Sequencing Technology

(2015) Yanxiao Feng et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Genome Wide Re-Annotation of Caldicellulosiruptor saccharolyticus with New Insights into Genes Involved in Biomass Degradation and Hydrogen Production

(2015) Nupoor Chowdhary et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

(2014) Steven D Brown et al.   Biotechnology for Biofuels

Update on RefSeq microbial genomes resources

(2014) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Updating microbial genomic sequences: improving accuracy & innovation

(2014) Hongseok Tae et al.   BioData Mining

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Reducing assembly complexity of microbial genomes with single-molecule sequencing

(2013) Sergey Koren et al.   GENOME BIOLOGY

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

(2013) Erin B Fichot et al.   Microbiome

Biological conversion of carbon monoxide to ethanol: Effect of pH, gas pressure, reducing agent and yeast extract

(2012) Haris Nalakath Abubackar et al.   BIORESOURCE TECHNOLOGY

The automatic annotation of bacterial genomes

(2012) E. J. Richardson et al.   BRIEFINGS IN BIOINFORMATICS

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

DEVELOPMENT OF MICROORGANISMS FOR CELLULOSE-BIOFUEL CONSOLIDATED BIOPROCESSINGS: METABOLIC ENGINEERS' TRICKS

(2012) Roberto Mazzoli   Computational and Structural Biotechnology Journal

2,3-Butanediol Production by Acetogenic Bacteria, an Alternative Route to Chemical Synthesis, Using Industrial Waste Gas

(2011) Michael Köpke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fermentative production of ethanol from carbon monoxide

(2011) Michael Köpke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reannotation of the genome sequence of Clostridium difficile strain 630

(2011) M. Monot et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Medium optimization for ethanol production with Clostridium autoethanogenum with carbon monoxide as sole carbon source

(2010) Ying Guo et al.   BIORESOURCE TECHNOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

BRENDA, the enzyme information system in 2011

(2010) M. Scheer et al.   NUCLEIC ACIDS RESEARCH

Clostridium ljungdahlii represents a microbial production platform based on syngas

(2010) M. Kopke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From complete genome sequence to ‘complete’ understanding?

(2010) Michael Y. Galperin et al.   TRENDS IN BIOTECHNOLOGY

Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells

(2008) Jacqueline L. Cotter et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Influence of process parameters on growth of Clostridium ljungdahlii and Clostridium autoethanogenum on synthesis gas

(2008) Jacqueline L. Cotter et al.   ENZYME AND MICROBIAL TECHNOLOGY

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE