Sampled ensemble neutrality as a feature to classify potential structured RNAs

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations

(2012) Hisanori Kiryu et al.   BIOINFORMATICS

An RNA Mapping DataBase for curating RNA structure mapping experiments

(2012) Pablo Cordero et al.   BIOINFORMATICS

Describing the structural robustness landscape of bacterial small RNAs

(2012) Guillermo Rodrigo et al.   BMC EVOLUTIONARY BIOLOGY

Evaluating our ability to predict the structural disruption of RNA by SNPs

(2012) Justin Ritz et al.   BMC GENOMICS

MicroRNA Precursors Are Not Structurally Robust but Plastic

(2012) Guillermo Rodrigo et al.   Genome Biology and Evolution

Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies

(2012) Raheleh Salari et al.   NUCLEIC ACIDS RESEARCH

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Disease-Associated Mutations That Alter the RNA Structural Ensemble

(2010) Matthew Halvorsen et al.   PLoS Genetics

BIOINFORMATIC ANALYSIS OF THE NEUTRALITY OF RNA SECONDARY STRUCTURE ELEMENTS ACROSS GENOTYPES REVEALS EVIDENCE FOR DIRECT EVOLUTION OF GENETIC ROBUSTNESS IN HCV

(2010) ALEXANDER CHURKIN et al.   Journal of Bioinformatics and Computational Biology

Congruent Evolution of Genetic and Environmental Robustness in Micro-RNA

(2009) G. J. Szollosi et al.   MOLECULAR BIOLOGY AND EVOLUTION

The tedious task of finding homologous noncoding RNA genes

(2009) P. Menzel et al.   RNA

De novo prediction of structured RNAs from genomic sequences

(2009) Jan Gorodkin et al.   TRENDS IN BIOTECHNOLOGY

Discovering cis-Regulatory RNAs in Shewanella Genomes by Support Vector Machines

(2009) Xing Xu et al.   PLoS Computational Biology

Dinucleotide controlled null models for comparative RNA gene prediction

(2008) Tanja Gesell et al.   BMC BIOINFORMATICS

Strategies for measuring evolutionary conservation of RNA secondary structures

(2008) Andreas R Gruber et al.   BMC BIOINFORMATICS

A fast structural multiple alignment method for long RNA sequences

(2008) Yasuo Tabei et al.   BMC BIOINFORMATICS

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions

(2008) Alexander Churkin et al.   BMC BIOINFORMATICS

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

Efficient Algorithms for Probing the RNA Mutation Landscape

(2008) Jérôme Waldispühl et al.   PLoS Computational Biology