Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

SecReT6: a web-based resource for type VI secretion systems found in bacteria

(2015) Jun Li et al.   ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Biosynthetic genes and activity spectrum of antifungal polyynes fromCollimonas fungivorans Ter331

(2014) Kathrin Fritsche et al.   ENVIRONMENTAL MICROBIOLOGY

Improved selectivity of an engineered multi-product terpene synthase

(2014) Ryan Lauchli et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Terpene synthases are widely distributed in bacteria

(2014) Yuuki Yamada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products

(2014) Marnix H. Medema et al.   PLoS Computational Biology

Volatile-mediated interactions between phylogenetically different soil bacteria

(2014) Paolina Garbeva et al.   Frontiers in Microbiology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

IslandViewer update: improved genomic island discovery and visualization

(2013) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Analysis of the role of theAspergillus nigeraminolevulinic acid synthase (hemA) gene illustrates the difference between regulation of yeast and fungal haem- and sirohaem-dependent pathways

(2012) Angelique C.W. Franken et al.   FEMS MICROBIOLOGY LETTERS

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

(2012) Joakim Ågren et al.   PLoS One

Comparative genomics of bacteria from the genus Collimonas: linking (dis)similarities in gene content to phenotypic variation and conservation

(2012) F. Mela et al.   Environmental Microbiology Reports

Exploration and Mining of the Bacterial Terpenome

(2011) David E. Cane et al.   ACCOUNTS OF CHEMICAL RESEARCH

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

(2011) Francesca Mela et al.   ISME Journal

The Type VI Secretion System: A Multipurpose Delivery System with a Phage-Like Machinery

(2011) Angela R. Records   MOLECULAR PLANT-MICROBE INTERACTIONS

Type VI secretion delivers bacteriolytic effectors to target cells

(2011) Alistair B. Russell et al.   NATURE

NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity

(2011) Marc Röttig et al.   NUCLEIC ACIDS RESEARCH

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Cloning and characterization of Pfl_1841, a 2-methylenebornane synthase in Pseudomonas fluorescens PfO-1

(2011) Wayne K.W. Chou et al.   TETRAHEDRON

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

(2011) Kevin Galens et al.   Standards in Genomic Sciences

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Siderophore uptake in bacteria and the battle for iron with the host; a bird’s eye view

(2010) Byron C. Chu et al.   BIOMETALS

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Biosynthesis of HSAF, a Tetramic Acid-Containing Macrolactam from Lysobacter enzymogenes

(2010) Lili Lou et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Chemistry and biology of siderophores

(2010) Robert C. Hider et al.   NATURAL PRODUCT REPORTS

What is type VI secretion doing in all those bugs?

(2010) Sandra Schwarz et al.   TRENDS IN MICROBIOLOGY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

(2009) Tsai-Tien Tseng et al.   BMC MICROBIOLOGY

Impact ofCollimonasbacteria on community composition of soil fungi

(2009) Sachie Höppener-Ogawa et al.   ENVIRONMENTAL MICROBIOLOGY

The bacterial genusCollimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments

(2009) Johan H. J. Leveau et al.   ENVIRONMENTAL MICROBIOLOGY

Antimicrobial combined action of terpenes against the food-borne microorganismsEscherichia coli, Staphylococcus aureusandBacillus cereus

(2009) M. N. Gallucci et al.   FLAVOUR AND FRAGRANCE JOURNAL

Many substrates and functions of type II secretion: lessons learned fromLegionella pneumophila

(2009) Nicholas P Cianciotto   Future Microbiology

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients

(2009) M. T. G. Holden et al.   JOURNAL OF BACTERIOLOGY

Violacein-Producing Collimonas sp. from the Sea Surface Microlayer of Costal Waters in Trøndelag, Norway

(2009) Sigrid Hakvåg et al.   Marine Drugs

The enigma of cytosolic two-component systems: a hypothesis

(2009) Tino Krell et al.   Environmental Microbiology Reports

Serine peptidases: Classification, structure and function

(2008) M. J. Page et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331

(2008) Kathrin Fritsche et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331

(2008) Francesca Mela et al.   FEMS MICROBIOLOGY ECOLOGY

Collimonas arenae sp. nov. and Collimonas pratensis sp. nov., isolated from (semi-)natural grassland soils

(2008) S. Hoppener-Ogawa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved?

(2008) Jan Aaldrik Warmink et al.   ISME Journal

Regulation of Cyclic Lipopeptide Biosynthesis in Pseudomonas fluorescens by the ClpP Protease

(2008) I. de Bruijn et al.   JOURNAL OF BACTERIOLOGY

Biosynthesis of the Sesquiterpene Antibiotic Albaflavenone inStreptomyces coelicolorA3(2)

(2008) Bin Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY