A survey of tandem repeat instabilities and associated gene expression changes in 35 colorectal cancers

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

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Microsatellite genotyping reveals a signature in breast cancer exomes

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Genome-wide analysis of noncoding regulatory mutations in cancer

(2014) Nils Weinhold et al.   NATURE GENETICS

Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types

(2014) Nils J Fredriksson et al.   NATURE GENETICS

The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data

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Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia

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A colorectal cancer classification system that associates cellular phenotype and responses to therapy

(2013) Anguraj Sadanandam et al.   NATURE MEDICINE

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly

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The Life History of 21 Breast Cancers

(2012) Serena Nik-Zainal et al.   CELL

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

(2012) Guruprasad Ananda et al.   Genome Biology and Evolution

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

A robust genomic signature for the detection of colorectal cancer patients with microsatellite instability phenotype and high mutation frequency

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Comprehensive molecular characterization of human colon and rectal cancer

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Absolute quantification of somatic DNA alterations in human cancer

(2012) Scott L Carter et al.   NATURE BIOTECHNOLOGY

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

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Molecular Genetics of Colorectal Cancer

(2011) Eric R. Fearon   Annual Review of Pathology-Mechanisms of Disease

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

(2011) T. Hinoue et al.   GENOME RESEARCH

Unique DNA methylome profiles in CpG island methylator phenotype colon cancers

(2011) Y. Xu et al.   GENOME RESEARCH

A Genomic Portrait of Human Microsatellite Variation

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Diverse somatic mutation patterns and pathway alterations in human cancers

(2010) Zhengyan Kan et al.   NATURE

A map of human genome variation from population-scale sequencing

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Mismatch repair deficient colorectal cancer in the era of personalized treatment

(2010) Madeleine Hewish et al.   Nature Reviews Clinical Oncology

Microsatellite instability in colorectal cancer—the stable evidence

(2010) Eduardo Vilar et al.   Nature Reviews Clinical Oncology

Repeat instability as the basis for human diseases and as a potential target for therapy

(2010) Arturo López Castel et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Sequence Alignment/Map format and SAMtools

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Marked variation in predicted and observed variability of tandem repeat loci across the human genome

(2008) Colm T O'Dushlaine et al.   BMC GENOMICS

DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers

(2008) R. N. Jorissen et al.   CLINICAL CANCER RESEARCH

Proximal and distal colorectal cancers show distinct gene-specific methylation profiles and clinical and molecular characteristics

(2008) Guoren Deng et al.   EUROPEAN JOURNAL OF CANCER

The genetics of the p53 pathway, apoptosis and cancer therapy

(2008) Alexei Vazquez et al.   NATURE REVIEWS DRUG DISCOVERY