Systematic characterization of the branch point binding protein, splicing factor 1, gene family in plant development and stress responses

The Dynamic Kaleidoscope of RNA Biology in Plants

(2020) Julia Bailey-Serres et al.   PLANT PHYSIOLOGY

Deoxynivalenol globally affects the selection of 3’ splice sites in human cells by suppressing the splicing factors, U2AF1 and SF1

(2020) Zhangsheng Hu et al.   RNA Biology

Arabidopsis U2AF65 Regulates Flowering Time and the Growth of Pollen Tubes

(2019) Hyo-Young Park et al.   Frontiers in Plant Science

Alternative splicing and translation play important roles in hypoxic germination in rice

(2018) Mo-Xian Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Selective degradation of splicing factor CAPERα by anticancer sulfonamides

(2017) Taisuke Uehara et al.   Nature Chemical Biology

The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms

(2017) Hyo-Young Park et al.   PLANT CELL REPORTS

Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings

(2017) Fu-Yuan Zhu et al.   PLANT JOURNAL

PIECE 2.0: an update for the plant gene structure comparison and evolution database

(2016) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Breeding approaches and genomics technologies to increase crop yield under low-temperature stress

(2016) Uday Chand Jha et al.   PLANT CELL REPORTS

A Complex Interplay of Tandem- and Whole-Genome Duplication Drives Expansion of the L-Type Lectin Receptor Kinase Gene Family in the Brassicaceae

(2015) Johannes A. Hofberger et al.   Genome Biology and Evolution

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Cwf16p Associating with the Nineteen Complex Ensures Ordered Exon Joining in Constitutive Pre-mRNA Splicing in Fission Yeast

(2015) Noriko Sasaki-Haraguchi et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA inArabidopsis thaliana

(2014) Yun Hee Jang et al.   PLANT JOURNAL

Structure, phosphorylation and U2AF65 binding of the N-terminal domain of splicing factor 1 during 3′-splice site recognition

(2012) Yun Zhang et al.   NUCLEIC ACIDS RESEARCH

Frequent pathway mutations of splicing machinery in myelodysplasia

(2011) Kenichi Yoshida et al.   NATURE

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans

(2011) L. Ma et al.   RNA

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Deficiency of Splicing Factor 1 Suppresses the Occurrence of Testicular Germ Cell Tumors

(2010) R. Zhu et al.   CANCER RESEARCH

Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing

(2010) Margherita Corioni et al.   NUCLEIC ACIDS RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The Spliceosome: Design Principles of a Dynamic RNP Machine

(2009) Markus C. Wahl et al.   CELL

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

(2009) Mo Chen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

A BBP-Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast

(2008) Q. Wang et al.   NUCLEIC ACIDS RESEARCH