BEACON: automated tool for Bacterial GEnome Annotation ComparisON

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

A semi-automated genome annotation comparison and integration scheme

(2013) Zhe Liu et al.   BMC BIOINFORMATICS

Defensive Bacteriome Symbiont with a Drastically Reduced Genome

(2013) Atsushi Nakabachi et al.   CURRENT BIOLOGY

INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles

(2013) Intikhab Alam et al.   PLoS One

A beginner's guide to eukaryotic genome annotation

(2012) Mark Yandell et al.   NATURE REVIEWS GENETICS

BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

(2012) Pablo Pareja-Tobes et al.   PLoS One

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Solving the Problem: Genome Annotation Standards before the Data Deluge

(2011) William Klimke et al.   Standards in Genomic Sciences

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

(2011) Kevin Galens et al.   Standards in Genomic Sciences

Annotation confidence score for genome annotation: a genome comparison approach

(2009) Youngik Yang et al.   BIOINFORMATICS

Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

(2009) Peter Bakke et al.   PLoS One

Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)

(2009) Iain Anderson et al.   Standards in Genomic Sciences

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

DiProDB: a database for dinucleotide properties

(2008) Maik Friedel et al.   NUCLEIC ACIDS RESEARCH