Chytrid fungi shape bacterial communities on model particulate organic matter

Microhabitats are associated with diversity-productivity relationships in freshwater bacterial communities

(2020) Marian L Schmidt et al.   FEMS MICROBIOLOGY ECOLOGY

Chytrid rhizoid morphogenesis resembles hyphal development in multicellular fungi and is adaptive to resource availability

(2020) Davis Laundon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities

(2019) Tim N. Enke et al.   CURRENT BIOLOGY

Multi-faceted particle pumps drive carbon sequestration in the ocean

(2019) Philip W. Boyd et al.   NATURE

Understanding microbial community dynamics to improve optimal microbiome selection

(2019) Robyn J. Wright et al.   Microbiome

Highly diverse fungal communities in carbon-rich aquifers of two contrasting lakes in Northeast Germany

(2019) Anita K. Perkins et al.   Fungal Ecology

Cooperation and spatial self-organization determine rate and efficiency of particulate organic matter degradation in marine bacteria

(2019) Ali Ebrahimi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae degradation

(2019) Bo Pilgaard et al.   Scientific Reports

Biodegradation of dissolved humic substances by fungi

(2018) Sergio Collado et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure

(2018) Kieran A. Bates et al.   Nature Communications

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

(2017) Thijs Frenken et al.   ENVIRONMENTAL MICROBIOLOGY

Algal polysaccharide utilisation by saprotrophic planktonic marine fungi

(2017) Michael Cunliffe et al.   Fungal Ecology

Transformation of humic substances by the freshwater Ascomycete Cladosporium sp.

(2017) Keilor Rojas-Jimenez et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin

(2016) Johan Larsbrink et al.   Biotechnology for Biofuels

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow

(2016) Alexander B Bochdansky et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Microbial interactions lead to rapid micro-scale successions on model marine particles

(2016) Manoshi S. Datta et al.   Nature Communications

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

(2016) Shoko Iwai et al.   PLoS One

Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus

(2015) Jenifer B. Walke et al.   PLoS One

Importance of Saprotrophic Freshwater Fungi for Pollen Degradation

(2014) Christian Wurzbacher et al.   PLoS One

Forests fuel fish growth in freshwater deltas

(2014) Andrew J. Tanentzap et al.   Nature Communications

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Bacterial chitin degradation—mechanisms and ecophysiological strategies

(2013) Sara Beier et al.   Frontiers in Microbiology

Squid-Derived Chitin Oligosaccharides Are a Chemotactic Signal during Colonization by Vibrio fischeri

(2012) Mark J. Mandel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditions

(2009) KW Tang et al.   AQUATIC MICROBIAL ECOLOGY