Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq

Identification and characterization of the Populus sucrose synthase gene family

(2014) Xinmin An et al.   GENE

Systems Biology of Lignin Biosynthesis inPopulus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

(2014) Hsi-Chuan Chen et al.   PLANT CELL

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations

(2013) Hua Bao et al.   BMC GENOMICS

Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism

(2013) Xinguo Li et al.   BMC GENOMICS

Modeling transcriptional networks regulating secondary growth and wood formation in forest trees

(2013) Lijun Liu et al.   PHYSIOLOGIA PLANTARUM

Functional Characterization of the Poplar R2R3-MYB Transcription Factor PtoMYB216 Involved in the Regulation of Lignin Biosynthesis during Wood Formation

(2013) Qiaoyan Tian et al.   PLoS One

Gibberellin is required for the formation of tension wood and stem gravitropism in Acacia mangium seedlings

(2012) Widyanto Dwi Nugroho et al.   ANNALS OF BOTANY

Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa

(2012) Ruibo Hu et al.   BMC PLANT BIOLOGY

Reprogramming of gene expression during compression wood formation in pine: Coordinated modulation of S-adenosylmethionine, lignin and lignan related genes

(2012) David P Villalobos et al.   BMC PLANT BIOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus

(2012) Eryang Li et al.   NEW PHYTOLOGIST

RNA-Seq of Early-Infected Poplar Leaves by the Rust Pathogen Melampsora larici-populina Uncovers PtSultr3;5, a Fungal-Induced Host Sulfate Transporter

(2012) Benjamin Petre et al.   PLoS One

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution

(2012) Kazuhiko Yamasaki et al.   TRENDS IN PLANT SCIENCE

Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana

(2012) Pubudu P. Handakumbura et al.   Frontiers in Plant Science

Cellulose Synthase Complexes: Composition and Regulation

(2012) Lei Lei et al.   Frontiers in Plant Science

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing

(2011) ARMANDO GERALDES et al.   Molecular Ecology Resources

OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana

(2011) Eryang Li et al.   PLANT JOURNAL

VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation

(2011) Masatoshi Yamaguchi et al.   PLANT JOURNAL

EST analysis of functional genes associated with cell wall biosynthesis and modification in the secondary xylem of the yellow poplar (Liriodendron tulipifera) stem during early stage of tension wood formation

(2011) Hyunjung Jin et al.   PLANTA

An Overview of the Role of Molecular Chaperones in Protein Homeostasis

(2011) Ana O. Tiroli-Cepeda et al.   PROTEIN AND PEPTIDE LETTERS

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

The actin multigene family in Populus: organization, expression and phylogenetic analysis

(2010) Deqiang Zhang et al.   MOLECULAR GENETICS AND GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The Poplar MYB Transcription Factors, PtrMYB3 and PtrMYB20, are Involved in the Regulation of Secondary Wall Biosynthesis

(2010) Ryan L. McCarthy et al.   PLANT AND CELL PHYSIOLOGY

Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis

(2010) Ruiqin Zhong et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays

(2009) Minjie Wang et al.   BMC GENOMICS

Mechanical bending-induced tension wood formation with reduced lignin biosynthesis in Liriodendron tulipifera

(2009) Hyunjung Jin et al.   JOURNAL OF WOOD SCIENCE

ThePopulusGenome Integrative Explorer (PopGenIE): a new resource for exploring thePopulusgenome

(2009) Andreas Sjödin et al.   NEW PHYTOLOGIST

Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus

(2009) J. Love et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sucrose synthase affects carbon partitioning to increase cellulose production and altered cell wall ultrastructure

(2009) H. D. Coleman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

VASCULAR-RELATED NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots

(2008) Masatoshi Yamaguchi et al.   PLANT JOURNAL

Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata

(2008) A. Wagner et al.   PLANT PHYSIOLOGY