De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus) following exposure to surrogate Macondo crude oil

Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)

(2014) Jie Gao et al.   BMC GENOMICS

Effect of Deepwater Horizon Oil on Growth Rates of Juvenile Penaeid Shrimps

(2014) Lawrence P. Rozas et al.   Estuaries and Coasts

Detecting Selection in the Blue Crab, Callinectes sapidus, Using DNA Sequence Data from Multiple Nuclear Protein-Coding Genes

(2014) Bree K. Yednock et al.   PLoS One

Widespread Inhibition of Posttranscriptional Splicing Shapes the Cellular Transcriptome following Heat Shock

(2014) Reut Shalgi et al.   Cell Reports

New Levels of Transcriptome Complexity at Upper Thermal Limits in Wild Drosophila Revealed by Exon Expression Analysis

(2013) Marina Telonis-Scott et al.   GENETICS

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Impacts and Recovery of the Deepwater Horizon Oil Spill on Vegetation Structure and Function of Coastal Salt Marshes in the Northern Gulf of Mexico

(2012) Qianxin Lin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

(2011) Victor Zeng et al.   BMC GENOMICS

Human microsomal carbonyl reducing enzymes in the metabolism of xenobiotics: well-known and promising members of the SDR superfamily

(2011) Lucie Škarydová et al.   DRUG METABOLISM REVIEWS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes

(2011) A. Whitehead et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Ecological Impacts of the Deepwater Horizon Oil Spill: Implications for Immunotoxicity

(2011) Mace G. Barron   TOXICOLOGIC PATHOLOGY

Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome

(2010) Loren Hansen et al.   NUCLEIC ACIDS RESEARCH

Arthropod phylogeny: An overview from the perspectives of morphology, molecular data and the fossil record

(2009) Gregory D. Edgecombe   ARTHROPOD STRUCTURE & DEVELOPMENT

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Gene Expression of GST and CYP330A1 in Lipid-Rich and Lipid-Poor FemaleCalanus finmarchicus(Copepoda: Crustacea) Exposed to Dispersed Oil

(2009) Bj⊘rn Henrik Hansen et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES

Cellular stress and RNA splicing

(2009) Giuseppe Biamonti et al.   TRENDS IN BIOCHEMICAL SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS