Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

Practical Benefits of Knowing the Enemy: Modern Molecular Tools for Diagnosing the Etiology of Bacterial Diseases and Understanding the Taxonomy and Diversity of Plant-Pathogenic Bacteria

(2015) Carolee T. Bull et al.   Annual Review of Phytopathology

Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)

(2015) Daniel Wibberg et al.   JOURNAL OF BIOTECHNOLOGY

Identification of novel X anthomonas euvesicatoria type III effector proteins by a machine-learning approach

(2015) Doron Teper et al.   MOLECULAR PLANT PATHOLOGY

Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice

(2014) Kazuya Ishikawa et al.   Nature Communications

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex

(2013) Nemo Peeters et al.   BMC GENOMICS

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range

(2013) Neha Jalan et al.   BMC GENOMICS

Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

(2013) E. Sallet et al.   DNA RESEARCH

Identification of a putative cognate sensor kinase for the two-component response regulator HrpG, a key regulator controlling the expression of thehrpgenes inXanthomonas campestrispv.campestris

(2013) Rui-Fang Li et al.   ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute toXanthomonasphytopathogenesis

(2013) Shi-Qi An et al.   MOLECULAR MICROBIOLOGY

xopAC-triggered Immunity against Xanthomonas Depends on Arabidopsis Receptor-Like Cytoplasmic Kinase Genes PBL2 and RIPK

(2013) Endrick Guy et al.   PLoS One

Transcriptome profiling of Xanthomonas campestris pv. campestris grown in minimal medium MMX and rich medium NYG

(2013) Wei Liu et al.   RESEARCH IN MICROBIOLOGY

Small RNA sX13: A Multifaceted Regulator of Virulence in the Plant Pathogen Xanthomonas

(2013) Cornelius Schmidtke et al.   PLoS Pathogens

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Genome Sequence of Xanthomonas campestris JX, an Industrially Productive Strain for Xanthan Gum

(2012) F. Tao et al.   JOURNAL OF BACTERIOLOGY

Xanthomonas campestrispv.campestris(cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops

(2012) Joana G. Vicente et al.   MOLECULAR PLANT PATHOLOGY

Analysis of new type III effectors fromXanthomonasuncovers XopB and XopS as suppressors of plant immunity

(2012) Sebastian Schulze et al.   NEW PHYTOLOGIST

High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance

(2012) R. Bart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation

(2011) Devaki Bhaya et al.   Annual Review of Genetics

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp.

(2011) A. J. Bogdanove et al.   JOURNAL OF BACTERIOLOGY

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

(2011) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

(2011) Cornelius Schmidtke et al.   NUCLEIC ACIDS RESEARCH

Insertion Sequence- and Tandem Repeat-Based Genotyping Techniques for Xanthomonas citri pv. mangiferaeindicae

(2011) O. Pruvost et al.   PHYTOPATHOLOGY

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria

(2010) Jason E. McDermott et al.   INFECTION AND IMMUNITY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Detection and Functional Characterization of a 215 Amino Acid N-Terminal Extension in the Xanthomonas Type III Effector XopD

(2010) Joanne Canonne et al.   PLoS One

A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species

(2010) E. Fargier et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas

(2009) N. Ah-You et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas

(2009) Ahmed Hajri et al.   PLoS One

From Local Surveys to Global Surveillance: Three High-Throughput Genotyping Methods for Epidemiological Monitoring of Xanthomonas citri pv. citri Pathotypes

(2008) L. Bui Thi Ngoc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

(2008) Frank-Jörg Vorhölter et al.   JOURNAL OF BIOTECHNOLOGY