gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections

Inducing enhanced suffix arrays for string collections

(2017) Felipe A. Louza et al.   THEORETICAL COMPUTER SCIENCE

essaMEM: finding maximal exact matches using enhanced sparse suffix arrays

(2013) Michaël Vyverman et al.   BIOINFORMATICS

Faster semi-external suffix sorting

(2013) Jasbir Dhaliwal   INFORMATION PROCESSING LETTERS

Lightweight algorithms for constructing and inverting the BWT of string collections

(2012) Markus J. Bauer et al.   THEORETICAL COMPUTER SCIENCE

KABOOM! A new suffix array based algorithm for clustering expression data

(2011) Scott Hazelhurst et al.   BIOINFORMATICS

RepMaestro: scalable repeat detection on disk-based genome sequences

(2010) Nikolas Askitis et al.   BIOINFORMATICS

Efficient construction of an assembly string graph using the FM-index

(2010) J. T. Simpson et al.   BIOINFORMATICS

Wee LCP

(2010) Johannes Fischer   INFORMATION PROCESSING LETTERS

mkESA: enhanced suffix array construction tool

(2009) R. Homann et al.   BIOINFORMATICS