Next-Generation Sequencing of the Whole Bacterial Genome for Tracking Molecular Insight into the Broad-Spectrum Antimicrobial Resistance of Helicobacter pylori Clinical Isolates from the Democratic Republic of Congo

Genetic Determinants and Prediction of Antibiotic Resistance Phenotypes in Helicobacter pylori

(2019) Francis Lauener et al.   Journal of Clinical Medicine

Infections with Helicobacter pylori and challenges encountered in Africa

(2019) Stella Smith et al.   WORLD JOURNAL OF GASTROENTEROLOGY

A Next-Generation Sequencing-Based Approach to Identify Genetic Determinants of Antibiotic Resistance in Cambodian Helicobacter pylori Clinical Isolates

(2019) Vo Phuoc Tuan et al.   Journal of Clinical Medicine

Helicobacter pylori and Its Antibiotic Heteroresistance: A Neglected Issue in Published Guidelines

(2019) Albert A. Rizvanov et al.   Frontiers in Microbiology

Using Genomics to Track Global Antimicrobial Resistance

(2019) Rene S. Hendriksen et al.   Frontiers in Public Health

Next Generation Sequencing and Bioinformatics Methodologies for Infectious Disease Research and Public Health: Approaches, Applications, and Considerations for Development of Laboratory Capacity

(2019) Irina Maljkovic Berry et al.   JOURNAL OF INFECTIOUS DISEASES

Helicobacter pylori and Epstein–Barr Virus Infection in Gastric Diseases: Correlation with IL-10 and IL1RN Polymorphism

(2019) Fasciana Teresa et al.   Journal of Oncology

The magnitude of antibiotic resistance to Helicobacter pylori in Africa and identified mutations which confer resistance to antibiotics: systematic review and meta-analysis

(2018) Hyasinta Jaka et al.   BMC INFECTIOUS DISEASES

Resistance mechanisms of Helicobacter pylori and its dual target precise therapy

(2018) Yuehua Gong et al.   CRITICAL REVIEWS IN MICROBIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

How to eliminate gastric cancer-related death worldwide?

(2018) Yoshio Yamaoka   Nature Reviews Clinical Oncology

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

(2018) Märt Roosaare et al.   PeerJ

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

(2018) Freddie Bray et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Genome-based prediction of bacterial antibiotic resistance

(2018) Michelle Su et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Global Prevalence of Helicobacter pylori Infection: Systematic Review and Meta-Analysis

(2017) James K.Y. Hooi et al.   GASTROENTEROLOGY

Clinical use of whole genome sequencing for Mycobacterium tuberculosis

(2016) Adam A. Witney et al.   BMC Medicine

Emerging Helicobacter pylori levofloxacin resistance and novel genetic mutation in Nepal

(2016) Muhammad Miftahussurur et al.   BMC MICROBIOLOGY

Management ofHelicobacter pyloriinfection—the Maastricht V/Florence Consensus Report

(2016) P Malfertheiner et al.   GUT

Helicobacter pyloriand Antibiotic Resistance, A Continuing and Intractable Problem

(2016) Yue Hu et al.   HELICOBACTER

Review article: the global emergence ofHelicobacter pyloriantibiotic resistance

(2015) I. Thung et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Pathogenesis ofHelicobacter pyloriInfection

(2015) Dionyssios N. Sgouras et al.   HELICOBACTER

Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics

(2015) Brittany Goldberg et al.   mBio

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Discovery of novel mutations for clarithromycin resistance in Helicobacter pylori by using next-generation sequencing

(2014) Tran Thanh Binh et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Evolution of Amoxicillin Resistance of Helicobacter pylori In Vitro: Characterization of Resistance Mechanisms

(2014) Nadia N. Qureshi et al.   Microbial Drug Resistance

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Standardisation of disk diffusion results for antibiotic susceptibility testing using the sirscan automated zone reader

(2013) Michael Hombach et al.   BMC MICROBIOLOGY

Structure of RdxA - an oxygen-insensitive nitroreductase essential for metronidazole activation inHelicobacter pylori

(2012) Marta Martínez-Júlvez et al.   FEBS Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Point Mutations in Helicobacter pylori's fur Regulatory Gene that Alter Resistance to Metronidazole, a Prodrug Activated by Chemical Reduction

(2011) Sung Sook Choi et al.   PLoS One

Enhanced bacterial efflux system is the first step to the development of metronidazole resistance in Helicobacter pylori

(2010) Hitoshi Tsugawa et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Contribution of efflux pumps to clarithromycin resistance in Helicobacter pylori

(2010) Kenro Hirata et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Mechanisms of disease: Helicobacter pylori virulence factors

(2010) Yoshio Yamaoka   Nature Reviews Gastroenterology & Hepatology

Genetic analysis of Helicobacter pylori clinical isolates suggests resistance to metronidazole can occur without the loss of functional rdxA

(2009) So Yeong Kim et al.   JOURNAL OF ANTIBIOTICS

Mutations in penicillin-binding proteins 1, 2 and 3 are responsible for amoxicillin resistance in Helicobacter pylori

(2008) E. Rimbara et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Helicobacter pylori amoxicillin heteroresistance due to point mutations in PBP-1A in isogenic isolates

(2008) M. J. Matteo et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Efflux pump gene hefA of Helicobacter pylori plays an important role in multidrug resistance

(2008) Zhi-Qiang Liu et al.   WORLD JOURNAL OF GASTROENTEROLOGY