Analysis of Transcriptome and miRNAome in the Muscle of Bamei Pigs at Different Developmental Stages

Comprehensive Analysis of Differentially Expressed mRNA, lncRNA and circRNA and Their ceRNA Networks in the Longissimus Dorsi Muscle of Two Different Pig Breeds

(2019) Jing Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparison of micro RNA s in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs

(2019) Y. Liang et al.   ANIMAL GENETICS

Differential Transcriptome Analysis of Early Postnatal Developing Longissimus Dorsi Muscle from Two Pig Breeds Characterized in Divergent Myofiber Traits and Fatness

(2018) Xiaoxing Xu et al.   ANIMAL BIOTECHNOLOGY

MiR-27b Promotes Muscle Development by Inhibiting MDFI Expression

(2018) Lianjie Hou et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Comparative transcriptomic analysis of skeletal muscle tissue during prenatal stages in Tongcheng and Yorkshire pig using RNA-seq

(2018) Huijing Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits

(2018) Katarzyna Piórkowska et al.   GENETICS AND MOLECULAR BIOLOGY

Integrated Analyses Reveal Overexpressed Notch1 Promoting Porcine Satellite Cells’ Proliferation through Regulating the Cell Cycle

(2018) Yiren Jiao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome analysis reveals candidate genes involved in splay leg syndrome in piglets

(2018) Tao Wu et al.   JOURNAL OF APPLIED GENETICS

Comparative analyses of longissimus muscle miRNAomes reveal microRNAs associated with differential regulation of muscle fiber development between Tongcheng and Yorkshire pigs

(2018) Yu Xi et al.   PLoS One

Genetic variants in fat- and short-tailed sheep from high-throughput RNA-sequencing data

(2018) L. Ma et al.   ANIMAL GENETICS

Comparative Transcriptome Profiling of mRNA and lncRNA Related to Tail Adipose Tissues of Sheep

(2018) Lin Ma et al.   Frontiers in Genetics

Comparative Analysis of Long Noncoding RNAs Expressed during Intramuscular Adipocytes Adipogenesis in Fat-Type and Lean-Type Pigs

(2018) Yunmei Sun et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A comparison of prenatal muscle transcriptome and proteome profiles between pigs with divergent growth phenotypes

(2018) Peng Shang et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Global Transcriptome Analysis During Adipogenic Differentiation and Involvement of Transthyretin Gene in Adipogenesis in Cattle

(2018) Hanfang Cai et al.   Frontiers in Genetics

Differential expression profile of miRNAs in porcine muscle and adipose tissue during development

(2017) Qi Wang et al.   GENE

Identification of differentially expressed genes in longissimus dorsi muscle between Wei and Yorkshire pigs using RNA sequencing

(2017) Jingen Xu et al.   Genes & Genomics

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

(2017) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

MicroRNA expression profiles differ between primary myofiber of lean and obese pig breeds

(2017) Dongting He et al.   PLoS One

Long non-coding RNA ADNCR suppresses adipogenic differentiation by targeting miR-204

(2016) Mingxun Li et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genome-wide landscape of DNA methylomes and their relationship with mRNA and miRNA transcriptomes in oxidative and glycolytic skeletal muscles

(2016) Linyuan Shen et al.   Scientific Reports

Deciphering the microRNA transcriptome of skeletal muscle during porcine development

(2016) Miaomiao Mai et al.   PeerJ

Comparison of skeletal muscle miRNA and mRNA profiles among three pig breeds

(2015) Xinhua Hou et al.   MOLECULAR GENETICS AND GENOMICS

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

MicroRNA Transcriptome Profile Analysis in Porcine Muscle and the Effect of miR-143 on the MYH7 Gene and Protein

(2015) Jianjun Zuo et al.   PLoS One

Differential miRNA expression profiles in the longissimus dorsi muscle between intact and castrated male pigs

(2015) Zhaowei Cai et al.   RESEARCH IN VETERINARY SCIENCE

A Comprehensive MicroRNA Expression Profile Related to Hypoxia Adaptation in the Tibetan Pig

(2015) Bo Zhang et al.   PLoS One

Comparative Analysis of Muscle Transcriptome between Pig Genotypes Identifies Genes and Regulatory Mechanisms Associated to Growth, Fatness and Metabolism

(2015) Miriam Ayuso et al.   PLoS One

Comparison of the adipogenesis in intramuscular and subcutaneous adipocytes from Bamei and Landrace pigs

(2014) Guo Hua Zhang et al.   Biochemistry and Cell Biology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Integrative Analysis of Porcine microRNAome during Skeletal Muscle Development

(2013) Lijun Qin et al.   PLoS One

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

An HMGA2-IGF2BP2 Axis Regulates Myoblast Proliferation and Myogenesis

(2012) Zhizhong Li et al.   DEVELOPMENTAL CELL

MiR-23a inhibits myogenic differentiation through down regulation of fast myosin heavy chain isoforms

(2012) Li Wang et al.   EXPERIMENTAL CELL RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Discovery of MicroRNAs Associated with Myogenesis by Deep Sequencing of Serial Developmental Skeletal Muscles in Pigs

(2012) Xinhua Hou et al.   PLoS One

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Sca-1-Expressing Nonmyogenic Cells Contribute to Fibrosis in Aged Skeletal Muscle

(2011) M. Hidestrand et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

The adipokine leptin increases skeletal muscle mass and significantly alters skeletal muscle miRNA expression profile in aged mice

(2010) Mark W. Hamrick et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Epigenetic Profiles Distinguish Malignant Pleural Mesothelioma from Lung Adenocarcinoma

(2009) Y. Goto et al.   CANCER RESEARCH

Wnt and PPARγ signaling in osteoblastogenesis and adipogenesis

(2009) Ichiro Takada et al.   Nature Reviews Rheumatology

Transcriptional networks that regulate muscle stem cell function

(2009) Vincent G. Punch et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Canonical Wnt signalling induces satellite-cell proliferation during adult skeletal muscle regeneration

(2008) A. Otto et al.   JOURNAL OF CELL SCIENCE

PRDM16 controls a brown fat/skeletal muscle switch

(2008) Patrick Seale et al.   NATURE

Discovery of Porcine microRNAs and Profiling from Skeletal Muscle Tissues during Development

(2008) Ting-Hua Huang et al.   PLoS One

A microRNA signature for a BMP2-induced osteoblast lineage commitment program

(2008) Z. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA