The sources and transmission routes of microbial populations throughout a meat processing facility
Published 2020 View Full Article
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Title
The sources and transmission routes of microbial populations throughout a meat processing facility
Authors
Keywords
-
Journal
npj Biofilms and Microbiomes
Volume 6, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-07-10
DOI
10.1038/s41522-020-0136-z
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- (2019) Jethro S. Johnson et al. Nature Communications
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- (2019) Arnaud Bridier et al. Scientific Reports
- Anoxybacillus sediminis sp. nov., a novel moderately thermophilic bacterium isolated from a hot spring
- (2018) Inam Ullah Khan et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
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- (2016) Giuseppina Stellato et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2016) Nicholas A Bokulich et al. CURRENT OPINION IN BIOTECHNOLOGY
- Defining the food microbiome for authentication, safety, and process management
- (2016) B. C. Weimer et al. IBM JOURNAL OF RESEARCH AND DEVELOPMENT
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- Food safety trends: From globalization of whole genome sequencing to application of new tools to prevent foodborne diseases
- (2016) Siyun Wang et al. TRENDS IN FOOD SCIENCE & TECHNOLOGY
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- (2015) Jenni Hultman et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2015) O. de Smidt LETTERS IN APPLIED MICROBIOLOGY
- World Health Organization Global Estimates and Regional Comparisons of the Burden of Foodborne Disease in 2010
- (2015) Arie H. Havelaar et al. PLOS MEDICINE
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- (2014) Stéphane Chaillou et al. ISME Journal
- rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
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- Omics approaches in food safety: fulfilling the promise?
- (2014) Teresa M. Bergholz et al. TRENDS IN MICROBIOLOGY
- BAT - Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity
- (2014) Pedro Cardoso et al. Methods in Ecology and Evolution
- Recent discoveries and applications of Anoxybacillus
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- (2013) Krissi M. Hewitt et al. PLoS One
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- (2013) Tomáš Větrovský et al. PLoS One
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