DNA N6-Methyladenine Modification in Wild and Cultivated Soybeans Reveals Different Patterns in Nucleus and Cytoplasm

Mechanistic Insights into Cytosine-N3 Methylation by DNA Methyltransferase DNMT3A

(2019) Michael Dukatz et al.   JOURNAL OF MOLECULAR BIOLOGY

6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda

(2019) Shunmin He et al.   Nature Communications

Exploration of Performance Kinetics and Mechanism of Action of a Potential Novel Bioflocculant BF-VB2 on Clay and Dye Wastewater Flocculation

(2019) Varsha Bisht et al.   Frontiers in Microbiology

MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae

(2019) Zhao-Yu Liu et al.   Horticulture Research

Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean

(2019) Lexiang Ji et al.   PLANT CELL

N4-Cytosine DNA Methylation Is Involved in the Maintenance of Genomic Stability in Deinococcus radiodurans

(2019) Shengjie Li et al.   Frontiers in Microbiology

DNA N 6 -Adenine Methylation in Arabidopsis thaliana

(2018) Zhe Liang et al.   DEVELOPMENTAL CELL

N 6 -Methyladenine DNA Modification in the Human Genome

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Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Third Revolution in Sequencing Technology

(2018) Erwin L. van Dijk et al.   TRENDS IN GENETICS

DNA G-quadruplex structures mold the DNA methylome

(2018) Shi-Qing Mao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

De novo assembly of a Chinese soybean genome

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N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses

(2018) Qian Zhang et al.   Molecular Plant

N 6 -methyladenine DNA modification in the unicellular eukaryotic organism Tetrahymena thermophila

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MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

(2017) Chuan-Le Xiao et al.   NATURE METHODS

TET-mediated active DNA demethylation: mechanism, function and beyond

(2017) Xiaoji Wu et al.   NATURE REVIEWS GENETICS

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

(2017) Zhaobo Lang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress

(2017) Bing Yao et al.   Nature Communications

Dynamic Changes of Genome-Wide DNA Methylation during Soybean Seed Development

(2017) Yong-qiang Charles An et al.   Scientific Reports

5-Methylcytosine (5mC) and 5-Hydroxymethylcytosine (5hmC) Enhance the DNA Binding of CREB1 to the C/EBP Half-Site Tetranucleotide GCAA

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Chloroplast DNA Underwent Independent Selection from Nuclear Genes during Soybean Domestication and Improvement

(2016) Chao Fang et al.   Journal of Genetics and Genomics

DNA methylation in human epigenomes depends on local topology of CpG sites

(2016) Cecilia Lövkvist et al.   NUCLEIC ACIDS RESEARCH

Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig

(2016) Jianzhao Liu et al.   Nature Communications

An Adenine Code for DNA: A Second Life for N6-Methyladenine

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DNA Methylation on N6-Adenine in C. elegans

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N6-Methyladenine DNA Modification in Drosophila

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N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas

(2015) Ye Fu et al.   CELL

DNA N6-methyladenine: a new epigenetic mark in eukaryotes?

(2015) Guan-Zheng Luo et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Motif-based analysis of large nucleotide data sets using MEME-ChIP

(2014) Wenxiu Ma et al.   Nature Protocols

Crystal Structure of TET2-DNA Complex: Insight into TET-Mediated 5mC Oxidation

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DNA methylation: roles in mammalian development

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Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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Genetic structure of community acquired methicillin-resistant Staphylococcus aureus USA300

(2012) Ryan Tewhey et al.   BMC GENOMICS

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

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Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Circos: An information aesthetic for comparative genomics

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Real-Time DNA Sequencing from Single Polymerase Molecules

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