Gill Transcriptome Sequencing and De Novo Annotation of Acanthogobius ommaturus in Response to Salinity Stress

Relationship between sea surface salinity and ocean circulation and climate change

(2019) Yan Du et al.   Science China-Earth Sciences

De novo transcriptome assembly and analysis of differential gene expression following lipopolysaccharide challenge in Pelteobagrus fulvidraco

(2018) Qiu-Ning Liu et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis for identification of candidate genes related to sex determination and growth in Charybdis japonica

(2018) Fangrui Lou et al.   GENE

Transcriptome response of Atlantic salmon (Salmo salar ) to competition with ecologically similar non-native species

(2018) Xiaoping He et al.   Ecology and Evolution

Brain Transcriptome Profiling Analysis of Nile Tilapia (Oreochromis niloticus) Under Long-Term Hypersaline Stress

(2018) Yan Liu et al.   Frontiers in Physiology

Identification and characterization of miRNAs in the gills of the mud crab (Scylla paramamosain) in response to a sudden drop in salinity

(2018) Huan Wang et al.   BMC GENOMICS

A transcriptome resource for pharaoh cuttlefish ( Sepia pharaonis ) after ink ejection by brief pressing

(2016) Jing Wen et al.   Marine Genomics

Prolactin 177, prolactin 188, and extracellular osmolality independently regulate the gene expression of ion transport effectors in gill of Mozambique tilapia

(2015) Mayu Inokuchi et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

The acute salinity changes activate the dual pathways of endocrine responses in the brain and pituitary of tilapia

(2015) Adimoolam Aruna et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics

(2014) Celia Schunter et al.   BMC GENOMICS

Comprehensive Transcriptome Analysis Reveals Accelerated Genic Evolution in a Tibet Fish, Gymnodiptychus pachycheilus

(2014) Liandong Yang et al.   Genome Biology and Evolution

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Contrasting effects of natural and anthropogenic stressors on beta diversity in river organisms

(2013) Cayetano Gutiérrez-Cánovas et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

(2013) Jochen B. W. Wolf   Molecular Ecology Resources

Stretch-activated cation channel TRPV4 mediates hyposmotically induced prolactin release from prolactin cells of mozambique tilapia Oreochromis mossambicus

(2012) Soichi Watanabe et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Adaptation to different salinities exposes functional specialization in the intestine of the sea bream (Sparus aurata L.)

(2012) S. F. Gregorio et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

(2012) K. Schroder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New insights into gill ionocyte and ion transporter function in euryhaline and diadromous fish

(2012) Junya Hiroi et al.   RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Otolith chemical signatures of spottedtail goby Synechogobius ommaturus in coastal waters of China

(2011) Yingjun Wang et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Mechanosensitive signalling in fish gill and other ion transporting epithelia

(2010) W. S. Marshall   Acta Physiologica

Proline enhances Torulopsis glabrata growth during hyperosmotic stress

(2010) Sha Xu et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Co-ordination of osmotic stress responses through osmosensing and signal transduction events in fishes

(2010) T. G. Evans   JOURNAL OF FISH BIOLOGY

Population genetic structure and larval dispersal potential of spottedtail goby Synechogobius ommaturus in the north-west Pacific

(2010) N. Song et al.   JOURNAL OF FISH BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Teleost fish osmoregulation: what have we learned since August Krogh, Homer Smith, and Ancel Keys

(2008) David H. Evans   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Osmosensitivity of prolactin cells is enhanced by the water channel aquaporin-3 in a euryhaline Mozambique tilapia (Oreochromis mossambicus)

(2008) Soichi Watanabe et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Molecular characterization and mRNA expression of glutathione peroxidase and glutathione S-transferase during osmotic stress in olive flounder (Paralichthys olivaceus)

(2008) Cheol Young Choi et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Some insights into energy metabolism for osmoregulation in fish

(2008) Yung-Che Tseng et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Branchial FXYD protein expression in response to salinity change and its interaction with Na+/K+-ATPase of the euryhaline teleost Tetraodon nigroviridis

(2008) P.-J. Wang et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Evidence for an apical Na-Cl cotransporter involved in ion uptake in a teleost fish

(2008) J. Hiroi et al.   JOURNAL OF EXPERIMENTAL BIOLOGY