Analysis of the Hosts and Transmission Paths of SARS-CoV-2 in the COVID-19 Outbreak

Composition and divergence of coronavirus spike proteins and host ACE2 receptors predict potential intermediate hosts of SARS-CoV-2

(2020) Zhixin Liu et al.   JOURNAL OF MEDICAL VIROLOGY

Cross‐species transmission of the newly identified coronavirus 2019‐nCoV

(2020) Wei Ji et al.   JOURNAL OF MEDICAL VIROLOGY

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

Probable Pangolin Origin of SARS-CoV-2 Associated with the COVID-19 Outbreak

(2020) Tao Zhang et al.   CURRENT BIOLOGY

Phylogenetic analysis of the first four SARS‐CoV‐2 cases in Chile

(2020) Andrés E. Castillo et al.   JOURNAL OF MEDICAL VIROLOGY

Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop

(2020) Javier A. Jaimes et al.   JOURNAL OF MOLECULAR BIOLOGY

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

(2020) Chengxin Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

(2020) Tommy Tsan-Yuk Lam et al.   NATURE

The proximal origin of SARS-CoV-2

(2020) Kristian G. Andersen et al.   NATURE MEDICINE

Phylogenetic network analysis of SARS-CoV-2 genomes

(2020) Peter Forster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Investigation of SARS–CoV-2 Proteins and Their Interactions with Antiviral Drugs

(2020) Paolo Calligari et al.   Viruses-Basel

Genetic diversity and evolution of SARS-CoV-2

(2020) Tung Phan   INFECTION GENETICS AND EVOLUTION

A new method to cluster genomes based on cumulative Fourier power spectrum

(2018) Rui Dong et al.   GENE

Comparing protein structures and inferring functions with a novel three-dimensional Yau–Hausdorff method

(2018) Kun Tian et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Origin and evolution of pathogenic coronaviruses

(2018) Jie Cui et al.   NATURE REVIEWS MICROBIOLOGY

Virus Database and Online Inquiry System Based on Natural Vectors

(2017) Rui Dong et al.   Evolutionary Bioinformatics

Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia

(2017) Audrey Lacroix et al.   INFECTION GENETICS AND EVOLUTION

Ebolavirus Classification Based on Natural Vectors

(2015) Hui Zheng et al.   DNA AND CELL BIOLOGY

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

(2015) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity of coronavirus in bats from Eastern Thailand

(2015) Supaporn Wacharapluesadee et al.   Virology Journal

Viral genome phylogeny based on Lempel–Ziv complexity and Hausdorff distance

(2014) Chenglong Yu et al.   JOURNAL OF THEORETICAL BIOLOGY

A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering

(2014) Changchuan Yin et al.   JOURNAL OF THEORETICAL BIOLOGY

Identification of Diverse Alphacoronaviruses and Genomic Characterization of a Novel Severe Acute Respiratory Syndrome-Like Coronavirus from Bats in China

(2014) B. He et al.   JOURNAL OF VIROLOGY

Global comparison of multiple-segmented viruses in 12-dimensional genome space

(2014) Hsin-Hsiung Huang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia

(2014) A. N. Alagaili et al.   mBio

Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor

(2013) Xing-Yi Ge et al.   NATURE

A Real-Time PCR Assay for Bat SARS-Like Coronavirus Detection and Its Application to Italian Greater Horseshoe Bat Faecal Sample Surveys

(2012) Andrea Balboni et al.   TheScientificWorldJOURNAL

SARS-Coronavirus ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory

(2011) Meriadeg Ar Gouilh et al.   INFECTION GENETICS AND EVOLUTION

Correction: A Novel Method of Characterizing Genetic Sequences: Genome Space with Biological Distance and Applications

(2011) Mo Deng et al.   PLoS One

Identification of SARS-like coronaviruses in horseshoe bats (Rhinolophus hipposideros) in Slovenia

(2010) Danijela Rihtarič et al.   ARCHIVES OF VIROLOGY

Ecoepidemiology and Complete Genome Comparison of Different Strains of Severe Acute Respiratory Syndrome-Related Rhinolophus Bat Coronavirus in China Reveal Bats as a Reservoir for Acute, Self-Limiting Infection That Allows Recombination Events

(2010) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences

(2010) J. F. Drexler et al.   JOURNAL OF VIROLOGY

Intraspecies diversity of SARS-like coronaviruses in Rhinolophus sinicus and its implications for the origin of SARS coronaviruses in humans

(2009) J. Yuan et al.   JOURNAL OF GENERAL VIROLOGY

The spike protein of SARS-CoV — a target for vaccine and therapeutic development

(2009) Lanying Du et al.   NATURE REVIEWS MICROBIOLOGY

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

(2009) S.-R. Jun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA