Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing

Characterization of evolutionarily conserved key players affecting eukaryotic flagellar motility and fertility using a moss model

(2020) Rabea Meyberg et al.   NEW PHYTOLOGIST

The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants

(2020) Stefan A. Rensing et al.   PLANT CELL

Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis

(2019) Wei Xia et al.   Frontiers in Plant Science

Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella , Physcomitridium and Aphanorrhegma

(2019) Rafael Medina et al.   Journal of Systematics and Evolution

Somatic Mutation and Evolution in Plants

(2019) Daniel J. Schoen et al.   Annual Review of Ecology Evolution and Systematics

Genetic diversity, linkage disequilibrium, and population structure analysis of the tea plant (Camellia sinensis) from an origin center, Guizhou plateau, using genome-wide SNPs developed by genotyping-by-sequencing

(2019) Suzhen Niu et al.   BMC PLANT BIOLOGY

Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family

(2019) Thu-Phuong Nguyen et al.   G3-Genes Genomes Genetics

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

(2019) Noe Fernandez‐Pozo et al.   PLANT JOURNAL

Genetic Regulation of the 2D to 3D Growth Transition in the Moss Physcomitrella patens

(2018) Laura A. Moody et al.   CURRENT BIOLOGY

Great moments in evolution: the conquest of land by plants

(2018) Stefan A Rensing   CURRENT OPINION IN PLANT BIOLOGY

Physcomitrella patens Reute mCherry as a tool for efficient crossing within and between ecotypes

(2018) P.-F. Perroud et al.   PLANT BIOLOGY

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

(2018) Pierre-François Perroud et al.   PLANT JOURNAL

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

(2018) Daniel Lang et al.   PLANT JOURNAL

Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein

(2018) Xinxin Ding et al.   PLoS Genetics

Selfing in Haploid Plants and Efficacy of Selection: Codon Usage Bias in the Model Moss Physcomitrella patens

(2017) Péter Szövényi et al.   Genome Biology and Evolution

Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes

(2017) Marc Krasovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens : introducing the ecotype Reute

(2017) Manuel Hiss et al.   PLANT JOURNAL

SNP-ing out the differences: Investigating differences between Clostridium difficile lab strains

(2016) Wiep Klaas Smits   Virulence

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

(2015) Antonio Ribeiro et al.   BMC BIOINFORMATICS

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green AlgaChlamydomonas reinhardtii

(2015) Jonathan M. Flowers et al.   PLANT CELL

Cell-specific transcriptomic analyses of three-dimensional shoot development in the mossPhyscomitrella patens

(2015) Margaret H. Frank et al.   PLANT JOURNAL

Laser capture microdissection in Ectocarpus siliculosus: the pathway to cell-specific transcriptomics in brown algae

(2015) Denis Saint-Marcoux et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex

(2014) Anna K Beike et al.   BMC EVOLUTIONARY BIOLOGY

The chromatin landscape of the mossPhyscomitrella patensand its dynamics during development and drought stress

(2014) Thomas Widiez et al.   PLANT JOURNAL

Genetic Analysis of DEFECTIVE KERNEL1 Loop Function in Three-Dimensional Body Patterning in Physcomitrella patens

(2014) V. Demko et al.   PLANT PHYSIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines

(2011) Pierre-François Perroud et al.   NEW PHYTOLOGIST

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Natural variation of submergence tolerance among Arabidopsis thaliana accessions

(2010) D. Vashisht et al.   NEW PHYTOLOGIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A sequence-anchored genetic linkage map for the moss,Physcomitrella patens

(2008) Yasuko Kamisugi et al.   PLANT JOURNAL