Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds

N-Acyl Homoserine Lactone Derived Tetramic Acids Impair Photosynthesis in Phaeodactylum tricornutum

(2019) Frederike Stock et al.   ACS Chemical Biology

Assessing the suitability of Imaging-PAM fluorometry for monitoring growth of benthic diatoms

(2019) Willem Stock et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Quorum sensing in Vibrio spp.: the complexity of multiple signalling molecules in marine and aquatic environments

(2019) Léa Girard   CRITICAL REVIEWS IN MICROBIOLOGY

Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom

(2019) Emilio Cirri et al.   Frontiers in Microbiology

Lhcx proteins provide photoprotection via thermal dissipation of absorbed light in the diatom Phaeodactylum tricornutum

(2019) Jochen M. Buck et al.   Nature Communications

Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system

(2017) Bryndan P. Durham et al.   ENVIRONMENTAL MICROBIOLOGY

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation

(2017) Sarah R. Smith et al.   PLoS Genetics

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

(2017) Justin R. Seymour et al.   Nature Microbiology

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Bacterial Diversity Associated with the Coccolithophorid AlgaeEmiliania huxleyiandCoccolithus pelagicusf.braarudii

(2015) David H. Green et al.   Biomed Research International

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Haloperoxidase Mediated Quorum Quenching by Nitzschia cf pellucida: Study of the Metabolization of N-Acyl Homoserine Lactones by a Benthic Diatom

(2014) Michail Syrpas et al.   Marine Drugs

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics

(2013) Jesse A Port et al.   BMC GENOMICS

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

(2013) Klaas Vandepoele et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular regulation of the diatom cell cycle

(2013) Marie J.J. Huysman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes

(2011) Jia-Xing Yue et al.   NEW PHYTOLOGIST

Robust routes for the synthesis of N-acylated-l-homoserine lactone (AHL) quorum sensing molecules with high levels of enantiomeric purity

(2011) James T. Hodgkinson et al.   TETRAHEDRON LETTERS

Bacterial Colonization on Fecal Pellets of Harpacticoid Copepods and on Their Diatom Food

(2010) Marleen De Troch et al.   MICROBIAL ECOLOGY

Regulation of theChlamydomonasCell Cycle by a Stable, Chromatin-Associated Retinoblastoma Tumor Suppressor Complex

(2010) Bradley J.S.C. Olson et al.   PLANT CELL

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Testing significance relative to a fold-change threshold is a TREAT

(2009) D. J. McCarthy et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY