Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes
Published 2020 View Full Article
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Title
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes
Authors
Keywords
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Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-06-17
DOI
10.7554/elife.56998
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Note: Only part of the references are listed.- Can rumen bacteria communicate to each other?
- (2020) Mi-Young Won et al. Microbiome
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- (2020) Max M. Villa et al. mSystems
- 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
- (2019) Yuanqiang Zou et al. NATURE BIOTECHNOLOGY
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip
- (2019) Sasan Jalili-Firoozinezhad et al. Nature Biomedical Engineering
- Microbial Interaction Network Inference in Microfluidic Droplets
- (2019) Ryan H. Hsu et al. Cell Systems
- Drug-Resistant E. coli Bacteremia Transmitted by Fecal Microbiota Transplant
- (2019) Zachariah DeFilipp et al. NEW ENGLAND JOURNAL OF MEDICINE
- The Human Gut Microbiome: From Association to Modulation
- (2018) Thomas S.B. Schmidt et al. CELL
- Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
- (2018) Melanie Tramontano et al. Nature Microbiology
- Current trends of human infections and antibiotic resistance of the genus Shewanella
- (2017) K. Yousfi et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
- (2017) David M Needham et al. ISME Journal
- Moving beyond microbiome-wide associations to causal microbe identification
- (2017) Neeraj K. Surana et al. NATURE
- 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
- (2017) Supratim Mukherjee et al. NATURE BIOTECHNOLOGY
- Gut microbiota and IBD: causation or correlation?
- (2017) Josephine Ni et al. Nature Reviews Gastroenterology & Hepatology
- Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells
- (2017) Russell H. Cole et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characteristics of N-Acylhomoserine Lactones Produced by Hafnia alvei H4 Isolated from Spoiled Instant Sea Cucumber
- (2017) Hong-Man Hou et al. SENSORS
- Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
- (2017) Sonny T. M. Lee et al. Microbiome
- High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates
- (2016) Cheng-Ying Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Droplet microfluidics for microbiology: techniques, applications and challenges
- (2016) Tomasz S. Kaminski et al. LAB ON A CHIP
- Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
- (2016) Hilary P. Browne et al. NATURE
- The Human Intestinal Microbiome in Health and Disease
- (2016) Susan V. Lynch et al. NEW ENGLAND JOURNAL OF MEDICINE
- Culture of previously uncultured members of the human gut microbiota by culturomics
- (2016) Jean-Christophe Lagier et al. Nature Microbiology
- Systematic Review: Adverse Events of Fecal Microbiota Transplantation
- (2016) Sinan Wang et al. PLoS One
- The Altered Schaedler Flora: Continued Applications of a Defined Murine Microbial Community
- (2015) Meghan Wymore Brand et al. ILAR JOURNAL
- Accurate microfluidic sorting of droplets at 30 kHz
- (2015) Adam Sciambi et al. LAB ON A CHIP
- Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip
- (2015) Hyun Jung Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Monodisperse Emulsion Drop Microenvironments for Bacterial Biofilm Growth
- (2015) Connie B. Chang et al. Small
- Harnessing the landscape of microbial culture media to predict new organism–media pairings
- (2015) Matthew A. Oberhardt et al. Nature Communications
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- Microfluidic organs-on-chips
- (2014) Sangeeta N Bhatia et al. NATURE BIOTECHNOLOGY
- Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
- (2014) Michael C. Nelson et al. PLoS One
- Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa
- (2014) Liang Ma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
- (2014) Xuesong He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome
- (2014) A. M. Eren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Real-time image processing for label-free enrichment of Actinobacteria cultivated in picolitre droplets
- (2013) Emerson Zang et al. LAB ON A CHIP
- Single-cell analysis and sorting using droplet-based microfluidics
- (2013) Linas Mazutis et al. Nature Protocols
- A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
- (2013) A. Murat Eren et al. PLoS One
- Bacteria–surface interactions
- (2013) Hannah H. Tuson et al. Soft Matter
- Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
- (2013) A. Murat Eren et al. Methods in Ecology and Evolution
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Rapid screening of antibiotic toxicity in an automated microdroplet system
- (2012) Krzysztof Churski et al. LAB ON A CHIP
- Human gut-on-a-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow
- (2012) Hyun Jung Kim et al. LAB ON A CHIP
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
- (2012) Anthony A. Fodor et al. PLoS One
- In VitroActivities of CB-183,315, Vancomycin, and Metronidazole against 556 Strains of Clostridium difficile, 445 Other Intestinal Anaerobes, and 56 Enterobacteriaceae Species
- (2011) Diane M. Citron et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Microdroplet-Enabled Highly Parallel Co-Cultivation of Microbial Communities
- (2011) Jihyang Park et al. PLoS One
- Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
- (2011) A. L. Goodman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Detection of resistance genes and susceptibility patterns in Bacteroides and Parabacteroides strains
- (2010) Renata F. Boente et al. ANAEROBE
- High-throughput injection with microfluidics using picoinjectors
- (2010) A. R. Abate et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microfluidic Confinement of Single Cells of Bacteria in Small Volumes Initiates High-Density Behavior of Quorum Sensing and Growth and Reveals Its Variability
- (2009) James Q. Boedicker et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- SlipChip
- (2009) Wenbin Du et al. LAB ON A CHIP
- Wolbachia as a bacteriocyte-associated nutritional mutualist
- (2009) T. Hosokawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pillar-induced droplet merging in microfluidic circuits
- (2008) Xize Niu et al. LAB ON A CHIP
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