Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae)

Plastome phylogenomic analysis of Torreya (Taxaceae)

(2019) Xu Zhang et al.   Journal of Systematics and Evolution

OUP accepted manuscript

(2018)   ANNALS OF BOTANY

Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection

(2018) Richard H. Ree et al.   JOURNAL OF BIOGEOGRAPHY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms

(2018) Jin-Hua Ran et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Phylogenomic evidence for ancient recombination between plastid genomes of the Cupressus-Juniperus-Xanthocyparis complex (Cupressaceae)

(2018) Andan Zhu et al.   BMC EVOLUTIONARY BIOLOGY

Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae)

(2017) Xiao-Jian Qu et al.   Genome Biology and Evolution

Characterization of the complete plastome of western red cedar, Thuja plicata (Cupressaceae)

(2017) Kole F. Adelalu et al.   Conservation Genetics Resources

Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)

(2017) Xiao-Jian Qu et al.   Scientific Reports

Intercontinental disjunctions between eastern Asia and western North America in vascular plants highlight the biogeographic importance of the Bering land bridge from late Cretaceous to Neogene

(2016) Jun Wen et al.   Journal of Systematics and Evolution

Mitochondrial introgression and complex biogeographic history of the genus Picea

(2015) Jin-Hua Ran et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Exploring the Formation of a Disjunctive Pattern between Eastern Asia and North America Based on Fossil Evidence from Thuja (Cupressaceae)

(2015) Yi-Ming Cui et al.   PLoS One

Recognizing the species of Thuja (Cupressaceae) based on their cone and foliage morphology

(2015) Bin Sun et al.   Phytotaxa

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species

(2014) Yanzhen Zhang et al.   GENE

Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution

(2014) Wenhu Guo et al.   Genome Biology and Evolution

Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

(2014) Jun-Bo Yang et al.   Molecular Ecology Resources

Evolution and biogeography of gymnosperms

(2014) Xiao-Quan Wang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms

(2013) Xuan Yi et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

A new Oligocene Calocedrus from South China and its implications for transpacific floristic exchanges

(2012) Gongle Shi et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Distribution of living Cupressaceae reflects the breakup of Pangea

(2012) K. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hemisphere-scale differences in conifer evolutionary dynamics

(2012) A. B. Leslie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

Recent Synchronous Radiation of a Living Fossil

(2011) N. S. Nagalingum et al.   SCIENCE

Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies

(2010) Ching-Ping Lin et al.   Genome Biology and Evolution

Molecular phylogeny and biogeography of Pseudotsuga (Pinaceae): Insights into the floristic relationship between Taiwan and its adjacent areas

(2010) Xiao-Xin Wei et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversification and biogeography of Juniperus (Cupressaceae): variable diversification rates and multiple intercontinental dispersals

(2010) Kangshan Mao et al.   NEW PHYTOLOGIST

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Did Kauri (Agathis: Araucariaceae) Really Survive the Oligocene Drowning of New Zealand?

(2010) Ed Biffin et al.   SYSTEMATIC BIOLOGY

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

A fossil-calibrated relaxed clock forEphedraindicates an Oligocene age for the divergence of Asian and New World clades and Miocene dispersal into South America

(2009) Stefanie M. ICKERT-BOND et al.   Journal of Systematics and Evolution

Historical biogeography of the genus Chamaecyparis (Cupressaceae, Coniferales) based on its fossil record

(2009) (Christopher) Yu-Sheng Liu et al.   Palaeobiodiversity and Palaeoenvironments

Fat Embolism Syndromes Following Liposuction

(2008) Hui-Dong Wang et al.   AESTHETIC PLASTIC SURGERY

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species

(2008) Tomonori Hirao et al.   BMC PLANT BIOLOGY

Oligocene Austrocedrus from Tasmania (Australia): Comparisons with Austrocedrus chilensis

(2008) Rosemary Paull et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Reticulate evolution in Thuja inferred from multiple gene sequences: Implications for the study of biogeographical disjunction between eastern Asia and North America

(2008) Dan Peng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY