PiVR: An affordable and versatile closed-loop platform to study unrestrained sensorimotor behavior

From behavior to circuit modeling of light-seeking navigation in zebrafish larvae

(2020) Sophia Karpenko et al.   eLife

idtracker.ai: tracking all individuals in small or large collectives of unmarked animals

(2019) Francisco Romero-Ferrero et al.   NATURE METHODS

Visually Guided Behavior and Optogenetically Induced Learning in Head-Fixed Flies Exploring a Virtual Landscape

(2019) Hannah Haberkern et al.   CURRENT BIOLOGY

Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments

(2019) Vilim Štih et al.   PLoS Computational Biology

Drosophila melanogaster grooming possesses syntax with distinct rules at different temporal scales

(2019) Joshua M. Mueller et al.   PLoS Computational Biology

optoPAD, a closed-loop optogenetics system to study the circuit basis of feeding behaviors

(2019) José-Maria Moreira et al.   eLife

Functional Imaging and Optogenetics inDrosophila

(2018) Julie H. Simpson et al.   GENETICS

Dedicated photoreceptor pathways in Drosophila larvae mediate navigation by processing either spatial or temporal cues

(2018) Tim-Henning Humberg et al.   Nature Communications

Functional Imaging and Optogenetics inDrosophila

(2018) Julie H. Simpson et al.   GENETICS

Sensorimotor pathway controlling stopping behavior during chemotaxis in the Drosophila melanogaster larva

(2018) Ibrahim Tastekin et al.   eLife

Virtual reality for freely moving animals

(2017) John R Stowers et al.   NATURE METHODS

Dissection of theDrosophilaneuropeptide F circuit using a high-throughput two-choice assay

(2017) Lisha Shao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ethoscopes: An open platform for high-throughput ethomics

(2017) Quentin Geissmann et al.   PLOS BIOLOGY

The €100 lab: A 3D-printable open-source platform for fluorescence microscopy, optogenetics, and accurate temperature control during behaviour of zebrafish, Drosophila, and Caenorhabditis elegans

(2017) Andre Maia Chagas et al.   PLOS BIOLOGY

Optogenetic Neuronal Silencing in Drosophila during Visual Processing

(2017) Alex S. Mauss et al.   Scientific Reports

Feedback from Network States Generates Variability in a Probabilistic Olfactory Circuit

(2015) Andrew Gordus et al.   CELL

Visuomotor Transformations Underlying Hunting Behavior in Zebrafish

(2015) Isaac H. Bianco et al.   CURRENT BIOLOGY

Large-scale imaging in small brains

(2015) Misha B Ahrens et al.   CURRENT OPINION IN NEUROBIOLOGY

Open Labware: 3-D Printing Your Own Lab Equipment

(2015) Tom Baden et al.   PLOS BIOLOGY

Dynamical feature extraction at the sensory periphery guides chemotaxis

(2015) Aljoscha Schulze et al.   eLife

Bonsai: an event-based framework for processing and controlling data streams

(2015) Gonçalo Lopes et al.   Frontiers in Neuroinformatics

Natural Whisker-Guided Behavior by Head-Fixed Mice in Tactile Virtual Reality

(2014) N. J. Sofroniew et al.   JOURNAL OF NEUROSCIENCE

Independent optical excitation of distinct neural populations

(2014) Nathan C Klapoetke et al.   NATURE METHODS

Multilevel control of run orientation in Drosophila larval chemotaxis

(2014) Alex Gomez-Marin et al.   Frontiers in Behavioral Neuroscience

Neuronal Computations in the Olfactory System of Zebrafish

(2013) Rainer W. Friedrich   Annual Review of Neuroscience

Optogenetic control of Drosophila using a red-shifted channelrhodopsin reveals experience-dependent influences on courtship

(2013) Hidehiko K Inagaki et al.   NATURE METHODS

Towards a Comprehensive Catalog of Zebrafish Behavior 1.0 and Beyond

(2013) Allan V. Kalueff et al.   Zebrafish

Two-photon calcium imaging during fictive navigation in virtual environments

(2013) Misha B. Ahrens et al.   Frontiers in Neural Circuits

Deep Brain Photoreceptors Control Light-Seeking Behavior in Zebrafish Larvae

(2012) António M. Fernandes et al.   CURRENT BIOLOGY

Characterization of Drosophila Larval Crawling at the Level of Organism, Segment, and Somatic Body Wall Musculature

(2012) E. S. Heckscher et al.   JOURNAL OF NEUROSCIENCE

Controlling interneuron activity in Caenorhabditis elegans to evoke chemotactic behaviour

(2012) Askin Kocabas et al.   NATURE

Brain-wide neuronal dynamics during motor adaptation in zebrafish

(2012) Misha B. Ahrens et al.   NATURE

Controlling airborne cues to study small animal navigation

(2012) Marc Gershow et al.   NATURE METHODS

Real neuroscience in virtual worlds

(2011) Daniel A. Dombeck et al.   CURRENT OPINION IN NEUROBIOLOGY

Active sensation during orientation behavior in the Drosophila larva: more sense than luck

(2011) Alex Gomez-Marin et al.   CURRENT OPINION IN NEUROBIOLOGY

Molecular and Cellular Organization of the Taste System in the Drosophila Larva

(2011) J. Y. Kwon et al.   JOURNAL OF NEUROSCIENCE

Genetic Manipulation of Genes and Cells in the Nervous System of the Fruit Fly

(2011) Koen J.T. Venken et al.   NEURON

Active sampling and decision making in Drosophila chemotaxis

(2011) Alex Gomez-Marin et al.   Nature Communications

Distinct Retinal Pathways Drive Spatial Orientation Behaviors in Zebrafish Navigation

(2010) Harold A. Burgess et al.   CURRENT BIOLOGY

Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior

(2010) Johannes D Seelig et al.   NATURE METHODS

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation

(2010) Daniel A Dombeck et al.   NATURE NEUROSCIENCE

High-throughput ethomics in large groups of Drosophila

(2009) Kristin Branson et al.   NATURE METHODS

Transparent Adult Zebrafish as a Tool for In Vivo Transplantation Analysis

(2008) Richard Mark White et al.   Cell Stem Cell

Neuronal Decision-Making Circuits

(2008) William B. Kristan   CURRENT BIOLOGY

Cracking neural circuits in a tiny brain: new approaches for understanding the neural circuitry of Drosophila

(2008) Shawn R. Olsen et al.   TRENDS IN NEUROSCIENCES

A modular display system for insect behavioral neuroscience

(2007) Michael B. Reiser et al.   JOURNAL OF NEUROSCIENCE METHODS