Visualizing group II intron dynamics between the first and second steps of splicing
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Title
Visualizing group II intron dynamics between the first and second steps of splicing
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-06-05
DOI
10.1038/s41467-020-16741-4
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Note: Only part of the references are listed.- Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations
- (2019) Giulia Palermo et al. JOURNAL OF STRUCTURAL BIOLOGY
- Molecular Mechanism and Evolution of Nuclear Pre-mRNA and Group II Intron Splicing: Insights from Cryo-Electron Microscopy Structures
- (2018) Wojciech P. Galej et al. CHEMICAL REVIEWS
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- (2018) Vito Genna et al. STRUCTURE
- Metal–ligand interactions in drug design
- (2018) Laura Riccardi et al. Nature Reviews Chemistry
- Structural basis for the second step of group II intron splicing
- (2018) Russell T. Chan et al. Nature Communications
- Who Activates the Nucleophile in Ribozyme Catalysis? An Answer from the Splicing Mechanism of Group II Introns
- (2016) Lorenzo Casalino et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- A Self-Activated Mechanism for Nucleic Acid Polymerization Catalyzed by DNA/RNA Polymerases
- (2016) Vito Genna et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Structure of a group II intron in complex with its reverse transcriptase
- (2016) Guosheng Qu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Crystal structures of a group II intron lariat primed for reverse splicing
- (2016) M. Costa et al. SCIENCE
- Structure of a group II intron in complex with its reverse transcriptase
- (2016) Guosheng Qu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Protonation-Dependent Base Flipping at Neutral pH in the Catalytic Triad of a Self-Splicing Bacterial Group II Intron
- (2015) Maria Pechlaner et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- DelPhiPKa web server: predicting pKaof proteins, RNAs and DNAs
- (2015) Lin Wang et al. BIOINFORMATICS
- Crystal structure of group II intron domain 1 reveals a template for RNA assembly
- (2015) Chen Zhao et al. Nature Chemical Biology
- Crystal structure of a eukaryotic group II intron lariat
- (2014) Aaron R. Robart et al. NATURE
- In vitro characterization of the splicing efficiency and fidelity of the RmInt1 group II intron as a means of controlling the dispersion of its host mobile element
- (2014) Isabel Chillón et al. RNA
- Principles of ion recognition in RNA: insights from the group II intron structures
- (2014) M. Marcia et al. RNA
- Solving nucleic acid structures by molecular replacement: examples from group II intron studies
- (2013) Marco Marcia et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Rational Design of Particle Mesh Ewald Compatible Lennard-Jones Parameters for +2 Metal Cations in Explicit Solvent
- (2013) Pengfei Li et al. Journal of Chemical Theory and Computation
- cp2k: atomistic simulations of condensed matter systems
- (2013) Jürg Hutter et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Now on display: a gallery of group II intron structures at different stages of catalysis
- (2013) Marco Marcia et al. Mobile DNA
- Visualizing Group II Intron Catalysis through the Stages of Splicing
- (2012) Marco Marcia et al. CELL
- Metadynamics with Adaptive Gaussians
- (2012) Davide Branduardi et al. Journal of Chemical Theory and Computation
- Crystal structure of a group II intron in the pre-catalytic state
- (2012) Russell T Chan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Use of RmInt1, a Group IIB Intron Lacking the Intron-Encoded Protein Endonuclease Domain, in Gene Targeting
- (2010) Fernando M. García-Rodríguez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The tertiary structure of group II introns: implications for biological function and evolution
- (2010) Anna Marie Pyle CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
- (2010) Stefan Grimme et al. JOURNAL OF CHEMICAL PHYSICS
- The 2′-OH group at the group II intron terminus acts as a proton shuttle
- (2010) Michael Roitzsch et al. Nature Chemical Biology
- Splicing of the Sinorhizobium meliloti RmInt1 group II intron provides evidence of retroelement behavior
- (2010) Isabel Chillón et al. NUCLEIC ACIDS RESEARCH
- PLUMED: A portable plugin for free-energy calculations with molecular dynamics
- (2009) Massimiliano Bonomi et al. COMPUTER PHYSICS COMMUNICATIONS
- A structural analysis of the group II intron active site and implications for the spliceosome
- (2009) K. S. Keating et al. RNA
- Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
- (2008) In Suk Joung et al. JOURNAL OF PHYSICAL CHEMISTRY B
- “Nought May Endure but Mutability”: Spliceosome Dynamics and the Regulation of Splicing
- (2008) Duncan J. Smith et al. MOLECULAR CELL
- A glimpse into the active site of a group II intron and maybe the spliceosome, too
- (2008) K. T. Dayie et al. RNA
- Crystal Structure of a Self-Spliced Group II Intron
- (2008) N. Toor et al. SCIENCE
- P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
- (2007) Berk Hess Journal of Chemical Theory and Computation
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