Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution

(2019) Yibin Liu et al.   NATURE BIOTECHNOLOGY

Sequencing abasic sites in DNA at single-nucleotide resolution

(2019) Zheng J. Liu et al.   Nature Chemistry

Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data

(2019) Qian Liu et al.   Nature Communications

Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells

(2019) Huifen Cao et al.   Nature Communications

Nucleotide-resolution genome-wide mapping of oxidative DNA damage by click-code-seq

(2018) Junzhou Wu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Single-nucleotide resolution dynamic repair maps of UV damage inSaccharomyces cerevisiaegenome

(2018) Wentao Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering bacterial epigenomes using modern sequencing technologies

(2018) John Beaulaurier et al.   NATURE REVIEWS GENETICS

Genome-wide mapping of 8-oxo-7,8-dihydro-2′-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells

(2018) Stefano Amente et al.   NUCLEIC ACIDS RESEARCH

Sequencing the Mouse Genome for the Oxidatively Modified Base 8-Oxo-7,8-dihydroguanine by OG-Seq

(2017) Yun Ding et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

TET-mediated active DNA demethylation: mechanism, function and beyond

(2017) Xiaoji Wu et al.   NATURE REVIEWS GENETICS

Genome-wide footprinting: ready for prime time?

(2016) Myong-Hee Sung et al.   NATURE METHODS

Profiling genome-wide DNA methylation

(2016) Wai-Shin Yong et al.   Epigenetics & Chromatin

Biochemical reconstitution of TET1–TDG–BER-dependent active DNA demethylation reveals a highly coordinated mechanism

(2016) Alain R. Weber et al.   Nature Communications

Identification of DNA lesions using a third base pair for amplification and nanopore sequencing

(2015) Jan Riedl et al.   Nature Communications

Base excision repair: A critical player in many games

(2014) Susan S. Wallace   DNA REPAIR

High resolution mapping of modified DNA nucleobases using excision repair enzymes

(2014) D. Suzi Bryan et al.   GENOME RESEARCH

DNA Break Mapping Reveals Topoisomerase II Activity Genome-Wide

(2014) Laura Baranello et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis

(2014) Jiyoon Lee et al.   NUCLEIC ACIDS RESEARCH

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

(2014) Bo Cao et al.   Nature Communications

The other face of restriction: modification-dependent enzymes

(2013) Wil A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine in Mouse Embryonic Stem Cells

(2013) Zhiyi Sun et al.   Cell Reports

Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome

(2012) Miao Yu et al.   CELL

Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

(2012) M. J. Booth et al.   SCIENCE

Abasic sites preferentially form at regions undergoing DNA replication

(2010) Paul D. Chastain et al.   FASEB JOURNAL

Nanopore Detection of 8-Oxo-7,8-dihydro-2′-deoxyguanosine in Immobilized Single-Stranded DNA via Adduct Formation to the DNA Damage Site

(2010) Anna E. P. Schibel et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity

(2010) S.-H. Chan et al.   NUCLEIC ACIDS RESEARCH

Abasic sites and strand breaks in DNA cause transcriptional mutagenesis in Escherichia coli

(2010) Cheryl L. Clauson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate specificity and excision kinetics of natural polymorphic variants and phosphomimetic mutants of human 8-oxoguanine-DNA glycosylase

(2009) Viktoriya S. Sidorenko et al.   FEBS Journal

The Chemical Toxicology of 2-Deoxyribose Oxidation in DNA

(2007) Peter C. Dedon   CHEMICAL RESEARCH IN TOXICOLOGY