mirnaQC: a webserver for comparative quality control of miRNA-seq data

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

(2019) Ernesto Aparicio-Puerta et al.   NUCLEIC ACIDS RESEARCH

MirGeneDB 2.0: the metazoan microRNA complement

(2019) Bastian Fromm et al.   NUCLEIC ACIDS RESEARCH

Linking cervicovaginal immune signatures, HPV and microbiota composition in cervical carcinogenesis in non-Hispanic and Hispanic women

(2018) Paweł Łaniewski et al.   Scientific Reports

miRge 2.0 for comprehensive analysis of microRNA sequencing data

(2018) Yin Lu et al.   BMC BIOINFORMATICS

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies

(2018) Ernesto Aparicio-Puerta et al.   NUCLEIC ACIDS RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

RNAcentral: a comprehensive database of non-coding RNA sequences

(2016)   NUCLEIC ACIDS RESEARCH

Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation

(2016) Sabrina Shore et al.   PLoS One

Deep sequencing, profiling and detailed annotation of microRNAs in Takifugu rubripes

(2015) Chaninya Wongwarangkana et al.   BMC GENOMICS

sRNAtoolbox: an integrated collection of small RNA research tools

(2015) Antonio Rueda et al.   NUCLEIC ACIDS RESEARCH

Challenges in Using Circulating miRNAs as Cancer Biomarkers

(2015) Paola Tiberio et al.   Biomed Research International

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

New Insights from Existing Sequence Data: Generating Breakthroughs without a Pipette

(2013) Alex M. Plocik et al.   MOLECULAR CELL

Small Noncoding RNAs in the Germline

(2011) J. P. Saxe et al.   Cold Spring Harbor Perspectives in Biology

Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls

(2010) Daniela Witten et al.   BMC BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY