The Cervicovaginal Microbiota in Women Notified forChlamydia trachomatisInfection: A Case-Control Study at the Sexually Transmitted Infection Outpatient Clinic in Amsterdam, The Netherlands

The significance of Lactobacillus crispatus and L. vaginalis for vaginal health and the negative effect of recent sex: a cross-sectional descriptive study across groups of African women

(2015) Vicky Jespers et al.   BMC INFECTIOUS DISEASES

Correlates of the molecular vaginal microbiota composition of African women

(2015) Raju Gautam et al.   BMC INFECTIOUS DISEASES

Cross-Sectional Analysis of Selected Genital Tract Immunological Markers and Molecular Vaginal Microbiota in Sub-Saharan African Women, with Relevance to HIV Risk and Prevention

(2015) Jordan K. Kyongo et al.   Clinical and Vaccine Immunology

Lactobacillus crispatus mediates anti-inflammatory cytokine interleukin-10 induction in response to Chlamydia trachomatis infection in vitro

(2015) Antonietta Rizzo et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier

(2015) H Borgdorff et al.   Mucosal Immunology

The Impact of Hormonal Contraception and Pregnancy on Sexually Transmitted Infections and on Cervicovaginal Microbiota in African Sex Workers

(2015) Hanneke Borgdorff et al.   SEXUALLY TRANSMITTED DISEASES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women

(2014) Hanneke Borgdorff et al.   ISME Journal

The Vaginal Microbiota: What Have We Learned after a Decade of Molecular Characterization?

(2014) Janneke H. H. M. van de Wijgert et al.   PLoS One

Chlamydia trachomatisIgG seroprevalence in the general population of the Netherlands in 1996 and in 2007: differential changes by gender and age

(2014) F van Aar et al.   SEXUALLY TRANSMITTED INFECTIONS

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

A Mouse Model for Human Norovirus

(2013) S. Taube et al.   mBio

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

(2013) Jacques Ravel et al.   Microbiome

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis

(2013) Jean M Macklaim et al.   Microbiome

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

(2012) Sujatha Srinivasan et al.   PLoS One

Temporal Dynamics of the Human Vaginal Microbiota

(2012) P. Gajer et al.   Science Translational Medicine

Incidence and Correlates of Chlamydia trachomatis Infection in a High-Risk Cohort of Kenyan Women

(2012) Linnet Masese et al.   SEXUALLY TRANSMITTED DISEASES

Bacterial Vaginosis, Gonorrhea, and Chlamydial Infection Among Women Attending a Sexually Transmitted Disease Clinic: A Longitudinal Analysis of Possible Causal Links

(2011) Maria F. Gallo et al.   ANNALS OF EPIDEMIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

(2010) Robert Schmieder et al.   BMC BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Bacterial Vaginosis Assessed by Gram Stain and Diminished Colonization Resistance to Incident Gonococcal, Chlamydial, and Trichomonal Genital Infection

(2010) Rebecca M. Brotman et al.   JOURNAL OF INFECTIOUS DISEASES

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

A Longitudinal Study of Vaginal Douching and Bacterial Vaginosis--A Marginal Structural Modeling Analysis

(2008) R. M. Brotman et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Reducing bias through directed acyclic graphs

(2008) Ian Shrier et al.   BMC Medical Research Methodology