4.7 Article

Studying the Effects of ACE2 Mutations on the Stability, Dynamics, and Dissociation Process of SARS-CoV-2 S1/hACE2 Complexes

Journal

JOURNAL OF PROTEOME RESEARCH
Volume 19, Issue 11, Pages 4609-4623

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.jproteome.0c00348

Keywords

SARS-CoV-2; ACE2 polymorphism; Iranian ethnic groups; adaptive biasing force; ACE2 closed state; binding affinity

Funding

  1. Institute for Advanced Studies in Basic Sciences (IASBS) at Zanjan, Iran

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A highly infectious coronavirus, SARS-CoV-2, has spread in many countries. This virus recognizes its receptor, angiotensin-converting enzyme 2 (ACE2), using the receptor binding domain of its spike protein subunit S1. Many missense mutations are reported in various human populations for the ACE2 gene. In the current study, we predict the affinity of many ACE2 variants for binding to S1 protein using different computational approaches. The dissociation process of S1 from some variants of ACE2 is studied in the current work by molecular dynamics approaches. We study the relation between structural dynamics of ACE2 in closed and open states and its affinity for S1 protein of SARS-CoV-2.

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