MBBC: an efficient approach for metagenomic binning based on clustering
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
MBBC: an efficient approach for metagenomic binning based on clustering
Authors
Keywords
Metagenomics, Binning, Taxonomy-independent, EM Algorithm, Markov properties
Journal
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-02-04
DOI
10.1186/s12859-015-0473-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample
- (2012) Y. Wang et al. BIOINFORMATICS
- Classification of metagenomic sequences: methods and challenges
- (2012) S. S. Mande et al. BRIEFINGS IN BIOINFORMATICS
- Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective
- (2012) H. Teeling et al. BRIEFINGS IN BIOINFORMATICS
- A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio
- (2011) H. C. M. Leung et al. BIOINFORMATICS
- Taxonomic metagenome sequence assignment with structured output models
- (2011) Kaustubh R Patil et al. NATURE METHODS
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- ClaMS: A Classifier for Metagenomic Sequences
- (2011) Amrita Pati et al. Standards in Genomic Sciences
- Treephyler: fast taxonomic profiling of metagenomes
- (2010) F. Schreiber et al. BIOINFORMATICS
- DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences
- (2010) Tarini Ghosh et al. BMC BIOINFORMATICS
- Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers
- (2010) Bin Yang et al. BMC BIOINFORMATICS
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
- (2010) Manuel Stark et al. BMC GENOMICS
- MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences
- (2009) Matthew Horton et al. BIOINFORMATICS
- SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
- (2009) M. Monzoorul Haque et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- TACOA – Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
- (2009) Naryttza N Diaz et al. BMC BIOINFORMATICS
- WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
- (2009) Wolfgang Gerlach et al. BMC BIOINFORMATICS
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
- (2009) Arthur Brady et al. NATURE METHODS
- Figaro: a novel statistical method for vector sequence removal
- (2008) J. R. White et al. BIOINFORMATICS
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Binning sequences using very sparse labels within a metagenome
- (2008) Chon-Kit Chan et al. BMC BIOINFORMATICS
- Phylogenetic classification of short environmental DNA fragments
- (2008) Lutz Krause et al. NUCLEIC ACIDS RESEARCH
- MetaSim—A Sequencing Simulator for Genomics and Metagenomics
- (2008) Daniel C. Richter et al. PLoS One
- A simple, fast, and accurate method of phylogenomic inference
- (2008) Martin Wu et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started