Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

Knowledge-based extraction of adverse drug events from biomedical text

(2014) Ning Kang et al.   BMC BIOINFORMATICS

BioCreative-IV virtual issue

(2014) C. N. Arighi et al.   Database-The Journal of Biological Databases and Curation

A Knowledge-Driven Approach to Extract Disease-Related Biomarkers from the Literature

(2014) À. Bravo et al.   Biomed Research International

Crowdsourcing for bioinformatics

(2013) B. M. Good et al.   BIOINFORMATICS

Negated bio-events: analysis and identification

(2013) Raheel Nawaz et al.   BMC BIOINFORMATICS

Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing

(2013) Rong Xu et al.   BMC BIOINFORMATICS

Improving data and knowledge management to better integrate health care and research

(2013) M. Cases et al.   JOURNAL OF INTERNAL MEDICINE

Approximate Subgraph Matching-Based Literature Mining for Biomedical Events and Relations

(2013) Haibin Liu et al.   PLoS One

Extraction of potential adverse drug events from medical case reports

(2013) Harsha Gurulingappa et al.   Journal of Biomedical Semantics

Combining joint models for biomedical event extraction

(2012) David McClosky et al.   BMC BIOINFORMATICS

Mining the pharmacogenomics literature--a survey of the state of the art

(2012) U. Hahn et al.   BRIEFINGS IN BIOINFORMATICS

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions

(2012) Jörg Hakenberg et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships

(2012) Erik M. van Mulligen et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Using PharmGKB to train text mining approaches for identifying potential gene targets for pharmacogenomic studies

(2012) S. Pakhomov et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A knowledge-driven conditional approach to extract pharmacogenomics specific drug–gene relationships from free text

(2012) Rong Xu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Using rule-based natural language processing to improve disease normalization in biomedical text

(2012) Ning Kang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Text-mining solutions for biomedical research: enabling integrative biology

(2012) Dietrich Rebholz-Schuhmann et al.   NATURE REVIEWS GENETICS

The neurobiology of depression--revisiting the serotonin hypothesis. I. Cellular and molecular mechanisms

(2012) P. R. Albert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using a shallow linguistic kernel for drug–drug interaction extraction

(2011) Isabel Segura-Bedmar et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The value of data

(2011) Barend Mons et al.   NATURE GENETICS

DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene–disease networks

(2010) Anna Bauer-Mehren et al.   BIOINFORMATICS

Walk-Weighted Subsequence Kernels for Protein-Protein interaction extraction

(2010) Seonho Kim et al.   BMC BIOINFORMATICS

Protein–protein interaction extraction by leveraging multiple kernels and parsers

(2009) Makoto Miwa et al.   INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

Active Computerized Pharmacovigilance Using Natural Language Processing, Statistics, and Electronic Health Records: A Feasibility Study

(2009) X. Wang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

(2008) A. Ozgur et al.   BIOINFORMATICS

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

(2008) Halil Kilicoglu et al.   BMC BIOINFORMATICS

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes

(2008) Veronika Vincze et al.   BMC BIOINFORMATICS

Extraction of semantic biomedical relations from text using conditional random fields

(2008) Markus Bundschus et al.   BMC BIOINFORMATICS

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

(2008) Marcelo Fiszman et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Overview of BioCreative II gene mention recognition

(2008) Larry Smith et al.   GENOME BIOLOGY