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Title
DiffLogo: a comparative visualization of sequence motifs
Authors
Keywords
Sequence analysis, Sequence logo, Sequence motif, Position weight matrix, Binding sites
Journal
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-11-17
DOI
10.1186/s12859-015-0767-x
References
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Related references
Note: Only part of the references are listed.- Varying levels of complexity in transcription factor binding motifs
- (2015) Jens Keilwagen et al. NUCLEIC ACIDS RESEARCH
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- (2013) F. Mordelet et al. BIOINFORMATICS
- A general approach for discriminative de novo motif discovery from high-throughput data
- (2013) Jan Grau et al. NUCLEIC ACIDS RESEARCH
- CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation
- (2013) R. N. Plasschaert et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code
- (2013) Hirotaka Nakahashi et al. Cell Reports
- A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information
- (2012) Xiaotu Ma et al. NUCLEIC ACIDS RESEARCH
- Deep and wide digging for binding motifs in ChIP-Seq data
- (2010) I. V. Kulakovskiy et al. BIOINFORMATICS
- Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
- (2010) A. Jolma et al. GENOME RESEARCH
- Improved visualization of protein consensus sequences by iceLogo
- (2009) Niklaas Colaert et al. NATURE METHODS
- PROSITE, a protein domain database for functional characterization and annotation
- (2009) Christian J. A. Sigrist et al. NUCLEIC ACIDS RESEARCH
- Inferring Binding Energies from Selected Binding Sites
- (2009) Yue Zhao et al. PLoS Computational Biology
- Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
- (2008) C. Linhart et al. GENOME RESEARCH
- UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
- (2008) D. E. Newburger et al. NUCLEIC ACIDS RESEARCH
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