Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity

Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

(2020) Mohamed Hamed Arisha et al.   BMC GENOMICS

The Roots of Plant Frost Hardiness and Tolerance

(2019) Valentin Ambroise et al.   PLANT AND CELL PHYSIOLOGY

Functional Conservation and Divergence of Soybean GmSTOP1 Members in Proton and Aluminum Tolerance

(2018) Weiwei Wu et al.   Frontiers in Plant Science

Toxicity of aluminium on various levels of plant cells and organism: A review

(2017) Shweta Singh et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genome-Wide Transcriptome Analysis Reveals Conserved and Distinct Molecular Mechanisms of Al Resistance in Buckwheat (Fagopyrum esculentum Moench) Leaves

(2017) Wei Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Functional characterization of two half-size ABC transporter genes in aluminium-accumulating buckwheat

(2017) Gui Jie Lei et al.   NEW PHYTOLOGIST

Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis

(2017) Ayalew Ligaba-Osena et al.   NEW PHYTOLOGIST

Aluminum, a Friend or Foe of Higher Plants in Acid Soils

(2017) Emanuel Bojórquez-Quintal et al.   Frontiers in Plant Science

Auxin enhances aluminium-induced citrate exudation through upregulation ofGmMATEand activation of the plasma membrane H+-ATPase in soybean roots

(2016) Ping Wang et al.   ANNALS OF BOTANY

Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

(2016) Juge Liu et al.   BMC GENOMICS

Plant Adaptation to Acid Soils: The Molecular Basis for Crop Aluminum Resistance

(2015) Leon V. Kochian et al.   Annual Review of Plant Biology

Both aluminum and ABA induce the expression of an ABC-like transporter gene (FeALS3) in the Al-tolerant species Fagopyrum esculentum

(2015) Ivan Reyna-Llorens et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The impact of abiotic factors on cellulose synthesis

(2015) Ting Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice

(2015) V. Jisha et al.   PLoS One

Molecular mechanisms of Al tolerance in gramineous plants

(2014) Jian Feng Ma et al.   PLANT AND SOIL

Indaziflam Herbicidal Action: A Potent Cellulose Biosynthesis Inhibitor

(2014) C. Brabham et al.   PLANT PHYSIOLOGY

Salicylic acid alleviates aluminum toxicity in rice seedlings better than magnesium and calcium by reducing aluminum uptake, suppressing oxidative damage and increasing antioxidative defense

(2013) Poonam Pandey et al.   ECOTOXICOLOGY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Functional, structural and phylogenetic analysis of domains underlying the Al sensitivity of the aluminum-activated malate/anion transporter, TaALMT1

(2013) Ayalew Ligaba et al.   PLANT JOURNAL

Low pH, Aluminum, and Phosphorus Coordinately Regulate Malate Exudation through GmALMT1 to Improve Soybean Adaptation to Acid Soils

(2013) C. Liang et al.   PLANT PHYSIOLOGY

Association mapping combined with linkage analysis for aluminum tolerance among soybean cultivars released in Yellow and Changjiang River Valleys in China

(2013) Paul C. Korir et al.   THEORETICAL AND APPLIED GENETICS

Al-induced secretion of organic acid, gene expression and root elongation in soybean roots

(2012) Daoming Wu et al.   ACTA PHYSIOLOGIAE PLANTARUM

Physiological and molecular analysis of the interaction between aluminium toxicity and drought stress in common bean (Phaseolus vulgaris)

(2012) Zhong-Bao Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

XTH31, Encoding an in Vitro XEH/XET-Active Enzyme, Regulates Aluminum Sensitivity by Modulating in Vivo XET Action, Cell Wall Xyloglucan Content, and Aluminum Binding Capacity in Arabidopsis

(2012) X. F. Zhu et al.   PLANT CELL

Comparative Genome-Wide Transcriptional Analysis of Al-Responsive Genes Reveals Novel Al Tolerance Mechanisms in Rice

(2012) Tomokazu Tsutsui et al.   PLoS One

Transcriptomic responses to aluminum stress in soybean roots

(2011) Jiangfeng You et al.   GENOME

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Effect of indole-3-acetic acid on aluminum-induced efflux of malic acid from wheat (Triticum aestivum L.)

(2011) Ye Yang et al.   PLANT AND SOIL

An Al-inducible MATE gene is involved in external detoxification of Al in rice

(2011) Kengo Yokosho et al.   PLANT JOURNAL

Cell Wall Hemicellulose Contributes Significantly to Aluminum Adsorption and Root Growth in Arabidopsis

(2011) J. L. Yang et al.   PLANT PHYSIOLOGY

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

The role of the root apoplast in aluminium-induced inhibition of root elongation and in aluminium resistance of plants: a review

(2010) Walter J. Horst et al.   ANNALS OF BOTANY

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

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(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Transcriptional profile of maize roots under acid soil growth

(2010) Lucia Mattiello et al.   BMC PLANT BIOLOGY

Isolation and characterisation of two MATE genes in rye

(2010) Kengo Yokosho et al.   FUNCTIONAL PLANT BIOLOGY

The identification of aluminium-resistance genes provides opportunities for enhancing crop production on acid soils

(2010) P. R. Ryan et al.   JOURNAL OF EXPERIMENTAL BOTANY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Microarray analysis of Arabidopsis genome response to aluminum stress

(2009) S. B. Goodwin et al.   BIOLOGIA PLANTARUM

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice

(2009) C. F. Huang et al.   PLANT CELL

A Zinc Finger Transcription Factor ART1 Regulates Multiple Genes Implicated in Aluminum Tolerance in Rice

(2009) N. Yamaji et al.   PLANT CELL

Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize

(2009) Lyza G. Maron et al.   PLANT JOURNAL

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Identification of genes and pathways associated with aluminum stress and tolerance using transcriptome profiling of wheat near-isogenic lines

(2008) Mario Houde et al.   BMC GENOMICS

Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)

(2008) Gaiyun Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance

(2008) Jiping Liu et al.   PLANT JOURNAL