Topological characterization of neuronal arbor morphology via sequence representation: II - global alignment

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework

(2014) A. Mottini et al.   NEUROINFORMATICS

Statistical analysis and data mining of digital reconstructions of dendritic morphologies

(2014) Sridevi Polavaram et al.   Frontiers in Neuroanatomy

Computational solutions for omics data

(2013) Bonnie Berger et al.   NATURE REVIEWS GENETICS

New insights into the classification and nomenclature of cortical GABAergic interneurons

(2013) Javier DeFelipe et al.   NATURE REVIEWS NEUROSCIENCE

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

Engineering Approaches to Illuminating Brain Structure and Dynamics

(2013) Karl Deisseroth et al.   NEURON

A scaling law derived from optimal dendritic wiring

(2012) H. Cuntz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Comparative analysis of algorithms for next-generation sequencing read alignment

(2011) M. Ruffalo et al.   BIOINFORMATICS

Selective Coexpression of Multiple Chemical Markers Defines Discrete Populations of Neocortical GABAergic Neurons

(2011) Yoshiyuki Kubota et al.   CEREBRAL CORTEX

A General Principle of Neural Arbor Branch Density

(2011) Corinne M. Teeter et al.   CURRENT BIOLOGY

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

(2011) Julie D. Thompson et al.   PLoS One

Turtle Functions Downstream of Cut in Differentially Regulating Class Specific Dendrite Morphogenesis in Drosophila

(2011) Mikolaj J. Sulkowski et al.   PLoS One

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts

(2010) A. Cardona et al.   JOURNAL OF NEUROSCIENCE

Automated analysis of neuronal morphology, synapse number and synaptic recruitment

(2010) Sabine K. Schmitz et al.   JOURNAL OF NEUROSCIENCE METHODS

Fine-tuning of neuronal architecture requires two profilin isoforms

(2010) K. Michaelsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-Type Specific Properties of Pyramidal Neurons in Neocortex Underlying a Layout that Is Modifiable Depending on the Cortical Area

(2009) Alexander Groh et al.   CEREBRAL CORTEX

The Morphology of Supragranular Pyramidal Neurons in the Human Insular Cortex: A Quantitative Golgi Study

(2009) K. Anderson et al.   CEREBRAL CORTEX

On Comparing Neuronal Morphologies with the Constrained Tree-edit-distance

(2009) Todd A. Gillette et al.   NEUROINFORMATICS

The Tree-Edit-Distance, a Measure for Quantifying Neuronal Morphology

(2009) Holger Heumann et al.   NEUROINFORMATICS

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols

Quantifying neuronal size: Summing up trees and splitting the branch difference

(2008) K BROWN et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The Morphological Identity of Insect Dendrites

(2008) Hermann Cuntz et al.   PLoS Computational Biology