A unified framework for estimating parameters of kinetic biological models

An improved constraint filtering technique for inferring hidden states and parameters of a biological model

(2013) Syed Murtuza Baker et al.   BIOINFORMATICS

State and parameter estimation of the heat shock response system using Kalman and particle filters

(2012) Xin Liu et al.   BIOINFORMATICS

Experimental Design for Parameter Estimation of Gene Regulatory Networks

(2012) Bernhard Steiert et al.   PLoS One

Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism

(2012) Fiona Achcar et al.   PLoS Computational Biology

Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method

(2011) Gengjie Jia et al.   BIOINFORMATICS

Identifiability and observability analysis for experimental design in nonlinear dynamical models

(2011) A. Raue et al.   CHAOS

Addressing parameter identifiability by model-based experimentation

(2011) A. Raue et al.   IET Systems Biology

Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods

(2011) Oana-Teodora Chis et al.   PLoS One

On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics

(2011) Hongyu Miao et al.   SIAM REVIEW

Classic and contemporary approaches to modeling biochemical reactions

(2010) W. W. Chen et al.   GENES & DEVELOPMENT

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Parameter Estimation and Model Selection in Computational Biology

(2010) Gabriele Lillacci et al.   PLoS Computational Biology

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood

(2009) A. Raue et al.   BIOINFORMATICS

Systematic identifiability testing for unambiguous mechanistic modeling – application to JAK-STAT, MAP kinase, and NF-κB signaling pathway models

(2009) Tom Quaiser et al.   BMC Systems Biology

Extended Kalman Filter for Estimation of Parameters in Nonlinear State-Space Models of Biochemical Networks

(2008) Xiaodian Sun et al.   PLoS One

Parameter ranking by orthogonalization—Applied to nonlinear mechanistic models

(2007) Berit Floor Lund et al.   AUTOMATICA