4.6 Article

Unconditional Positivity-Preserving and Energy Stable Schemes for a Reduced Poisson-Nernst-Planck System

Journal

COMMUNICATIONS IN COMPUTATIONAL PHYSICS
Volume 27, Issue 5, Pages 1505-1529

Publisher

GLOBAL SCIENCE PRESS
DOI: 10.4208/cicp.OA-2019-0063

Keywords

Biological channels; diffusion models; ion transport; positivity

Funding

  1. National Science Foundation [DMS1812666]
  2. NSF Grant RNMS (KINet) [1107291]

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The Poisson-Nernst-Planck (PNP) system is a widely accepted model for simulation of ionic channels. In this paper, we design, analyze, and numerically validate a second order unconditional positivity-preserving scheme for solving a reduced PNP system, which can well approximate the three dimensional ion channel problem. Positivity of numerical solutions is proven to hold true independent of the size of time steps and the choice of the Poisson solver. The scheme is easy to implement without resorting to any iteration method. Several numerical examples further confirm the positivity-preserving property, and demonstrate the accuracy, efficiency, and robustness of the proposed scheme, as well as the fast approach to steady states.

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