An approach for normalization and quality control for NanoString RNA expression data

A new normalization for Nanostring nCounter gene expression data

(2019) Ramyar Molania et al.   NUCLEIC ACIDS RESEARCH

Tumor- and cytokine-primed human natural killer cells exhibit distinct phenotypic and transcriptional signatures

(2019) May Sabry et al.   PLoS One

Breast cancer PAM50 signature: correlation and concordance between RNA-Seq and digital multiplexed gene expression technologies in a triple negative breast cancer series

(2019) A. C. Picornell et al.   BMC GENOMICS

RCRnorm: An integrated system of random-coefficient hierarchical regression models for normalizing NanoString nCounter data

(2019) Gaoxiang Jia et al.   Annals of Applied Statistics

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

(2018) Katherine A. Hoadley et al.   CELL

Genome-Wide Expression Quantitative Trait Loci Analysis Using Mixed Models

(2018) Chaeyoung Lee   Frontiers in Genetics

Racial Differences in PAM50 Subtypes in the Carolina Breast Cancer Study

(2017) Melissa A. Troester et al.   JNCI-Journal of the National Cancer Institute

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

Racial Differences in PAM50 Subtypes in the Carolina Breast Cancer Study

(2017) Melissa A. Troester et al.   JNCI-Journal of the National Cancer Institute

The Energy of Data

(2017) Gábor J. Székely et al.   Annual Review of Statistics and Its Application

NanoStringDiff: a novel statistical method for differential expression analysis based on NanoString nCounter data

(2016) Hong Wang et al.   NUCLEIC ACIDS RESEARCH

Cancer Hallmarks, Biomarkers and Breast Cancer Molecular Subtypes

(2016) Xiaofeng Dai et al.   Journal of Cancer

Systematic noise degrades gene co-expression signals but can be corrected

(2015) Saskia Freytag et al.   BMC BIOINFORMATICS

Development and verification of the PAM50-based Prosigna breast cancer gene signature assay

(2015) Brett Wallden et al.   BMC Medical Genomics

Race-associated biological differences among Luminal A breast tumors

(2015) Monica D’Arcy et al.   BREAST CANCER RESEARCH AND TREATMENT

Evaluating Robustness and Sensitivity of the NanoString Technologies nCounter Platform to Enable Multiplexed Gene Expression Analysis of Clinical Samples

(2015) M. H. Veldman-Jones et al.   CANCER RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data

(2012) Daryl Waggott et al.   BIOINFORMATICS

ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) data

(2012) James R Perkins et al.   BMC GENOMICS

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

(2012) Christina Curtis et al.   NATURE

Housekeeping Gene Selection Advisory: Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) and β-Actin Are Targets of miR-644a

(2012) Kavleen Sikand et al.   PLoS One

Using control genes to correct for unwanted variation in microarray data

(2011) J. A. Gagnon-Bartsch et al.   BIOSTATISTICS

A Robust Statistical Method for Association-Based eQTL Analysis

(2011) Ning Jiang et al.   PLoS One

Von Hippel-Lindau (VHL) Inactivation in Sporadic Clear Cell Renal Cancer: Associations with Germline VHL Polymorphisms and Etiologic Risk Factors

(2011) Lee E. Moore et al.   PLoS Genetics

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

American Society of Clinical Oncology/College of American Pathologists Guideline Recommendations for Immunohistochemical Testing of Estrogen and Progesterone Receptors in Breast Cancer

(2010) M. Elizabeth H. Hammond et al.   JOURNAL OF CLINICAL ONCOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY

Tobacco smoking, body mass index, hypertension and kidney cancer risk in central and eastern Europe

(2008) P Brennan et al.   BRITISH JOURNAL OF CANCER

Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

(2008) H. M. Kang et al.   GENETICS

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY