Comparison of the cytoplastic genomes by resequencing: insights into the genetic diversity and the phylogeny of the agriculturally important genus Brassica

Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement

(2019) Kun Lu et al.   Nature Communications

A Novel Chimeric Mitochondrial Gene Confers Cytoplasmic Effects on Seed Oil Content in Polyploid Rapeseed (Brassica napus)

(2019) Jun Liu et al.   Molecular Plant

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

(2019) Hong An et al.   Nature Communications

Re-exploration of U’s Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences

(2018) Chang-Kug Kim et al.   Scientific Reports

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection

(2016) Jinghua Yang et al.   NATURE GENETICS

Glucosinolate biosynthesis in Eruca sativa

(2016) Dimitra Katsarou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Cytonuclear interactions affect adaptive traits of the annual plantArabidopsis thalianain the field

(2016) Fabrice Roux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

(2015) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Comparative mitochondrial genome analysis reveals the evolutionary rearrangement mechanism in Brassica

(2015) J. Yang et al.   PLANT BIOLOGY

High-throughput multiplex cpDNA resequencing clarifies the genetic diversity and genetic relationships among Brassica napus , Brassica rapa and Brassica oleracea

(2015) Jiangwei Qiao et al.   PLANT BIOTECHNOLOGY JOURNAL

Natural variation inARF18gene simultaneously affects seed weight and silique length in polyploid rapeseed

(2015) Jing Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transfer of Dicamba Tolerance from Sinapis arvensis to Brassica napus via Embryo Rescue and Recurrent Backcross Breeding

(2015) M. Jugulam et al.   PLoS One

Cytoplasmic male sterility in Brassicaceae crops

(2014) Hiroshi Yamagishi et al.   BREEDING SCIENCE

Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

(2014) F. Li et al.   DNA RESEARCH

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

(2014) Ying-hui Li et al.   NATURE BIOTECHNOLOGY

Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant

(2014) M. Virginia Sanchez-Puerta et al.   NEW PHYTOLOGIST

The chloroplast view of the evolution of polyploid wheat

(2014) Piotr Gornicki et al.   NEW PHYTOLOGIST

Polyploid Evolution of the Brassicaceae during the Cenozoic Era

(2014) Sateesh Kagale et al.   PLANT CELL

Effective Extraction and Assembly Methods for Simultaneously Obtaining Plastid and Mitochondrial Genomes

(2014) Wanjun Hao et al.   PLoS One

Complete Mitochondrial Genome of Eruca sativa Mill. (Garden Rocket)

(2014) Yankun Wang et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

(2014) Isobel AP Parkin et al.   GENOME BIOLOGY

Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line

(2013) Svetlana V. Nikiforova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete sequence of heterogenous-composition mitochondrial genome (Brassica napus) and its exogenous source

(2012) Juan Wang et al.   BMC GENOMICS

An Improved Chloroplast DNA Extraction Procedure for Whole Plastid Genome Sequencing

(2012) Chao Shi et al.   PLoS One

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing

(2011) Kerry A Lutz et al.   BMC BIOTECHNOLOGY

Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica

(2011) Shengxin Chang et al.   BMC GENOMICS

Production and characterization of an alloplasmic and monosomic addition line of Brassica rapa carrying the cytoplasm and one chromosome of Moricandia arvensis

(2011) Kota Tsutsui et al.   BREEDING SCIENCE

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

(2011) A. J. Alverson et al.   PLANT CELL

Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers

(2010) Charlotte J Allender et al.   BMC PLANT BIOLOGY

Intra- and intergenomic chromosome pairings revealed by dual-color GISH in trigenomic hybrids of Brassica juncea and B. carinata with B. maurorum

(2010) X. C. Yao et al.   GENOME

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Production and cytogenetic characterization of intertribal somatic hybrids between Brassica napus and Isatis indigotica and backcross progenies

(2009) Xue-zhu Du et al.   PLANT CELL REPORTS

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Production and characterization of intergeneric somatic hybrids between Brassica napus and Orychophragmus violaceus and their backcrossing progenies

(2008) Zhi-gang Zhao et al.   PLANT CELL REPORTS