PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome

Piwi-interacting RNA (piRNA) expression patterns in pearl oyster (Pinctada fucata) somatic tissues

(2019) Songqian Huang et al.   Scientific Reports

Identification of the differentially expressed genes of Pinctada maxima individuals with different sizes through transcriptome analysis

(2019) Ziman Wang et al.   Regional Studies in Marine Science

Pearl formation in the Japanese pearl oyster ( Pinctada fucata ) by CaCO 3 polymorphs: Pearl quality‐specific biomineralization processes and their similarity to shell regeneration

(2019) Yu Sato et al.   AQUACULTURE RESEARCH

Integrated application of transcriptomics and metabolomics provides insights into unsynchronized growth in pearl oyster Pinctada fucata martensii

(2019) Ruijuan Hao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing

(2019) Yue Zhang et al.   DNA RESEARCH

Characterization and analysis of the transcriptome in Gymnocypris selincuoensis on the Qinghai-Tibetan Plateau using single-molecule long-read sequencing and RNA-seq

(2019) Xiu Feng et al.   DNA RESEARCH

RNA sequencing: the teenage years

(2019) Rory Stark et al.   NATURE REVIEWS GENETICS

Seawater acidification and emerging contaminants: A dangerous marriage for haemocytes of marine bivalves

(2019) Marco Munari et al.   ENVIRONMENTAL RESEARCH

A high density genetic map by whole-genome resequencing for QTL fine-mapping and dissecting candidate genes for growth or sex traits in the pearl oyster (Pinctada fucata martensii)

(2019) Huiru Liu et al.   AQUACULTURE

Metabolomic responses of juvenile pearl oyster Pinctada maxima to different growth performances

(2018) Ruijuan Hao et al.   AQUACULTURE

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

(2018) Chunman Zuo et al.   Biotechnology for Biofuels

A survey of transcriptome complexity in Sus scrofa using single-molecule long-read sequencing

(2018) Yao Li et al.   DNA RESEARCH

Identification and analysis of an MKK4 homologue in response to the nucleus grafting operation and antigens in the pearl oyster, Pinctada fucata

(2018) Hua Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome profiling using Illumina- and SMRT-based RNA-seq of hot pepper for in-depth understanding of genes involved in CMV infection

(2018) Chunhui Zhu et al.   GENE

Diverse roles of fatty acid binding proteins (FABPs) in development and pathogenesis of cancers

(2018) Mina Amiri et al.   GENE

SMRT sequencing of full-length transcriptome of flea beetle Agasicles hygrophila (Selman and Vogt)

(2018) Dong Jia et al.   Scientific Reports

Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.)

(2018) Panrong Ren et al.   Frontiers in Plant Science

PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice

(2018) Guoqiang Zhang et al.   PLANT JOURNAL

High carotenoids content can enhance resistance of selected Pinctada fucata families to high temperature stress

(2017) Zihao Meng et al.   FISH & SHELLFISH IMMUNOLOGY

Effect of ocean acidification on growth, calcification, and gene expression in the pearl oyster, Pinctada fucata

(2017) Wenguang Liu et al.   MARINE ENVIRONMENTAL RESEARCH

Differential mantle transcriptomics and characterization of growth-related genes in the diploid and triploid pearl oyster Pinctada fucata

(2017) Yunyan Guan et al.   Marine Genomics

Regulation of body weight and energy homeostasis by neuronal cell adhesion molecule 1

(2017) Thomas Rathjen et al.   NATURE NEUROSCIENCE

A survey of the sorghum transcriptome using single-molecule long reads

(2016) Salah E. Abdel-Ghany et al.   Nature Communications

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

(2016) Bo Wang et al.   Nature Communications

Exenatide Alters Gene Expression of NCAM, ICAM, and VCAM in the Hippocampus of Type 2 Diabetic Model Mice

(2016) Esen Gumuslu et al.   MEDICAL SCIENCE MONITOR

Growth performance and biochemical composition of juvenile pearl oyster Pinctada martensii fed on artificial diets

(2015) Qingheng Wang et al.   AQUACULTURE INTERNATIONAL

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events

(2015) Hagen Tilgner et al.   NATURE BIOTECHNOLOGY

Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis

(2015) Zhichao Xu et al.   PLANT JOURNAL

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata)

(2014) Yu Shi et al.   GENE

Coupling mRNA processing with transcription in time and space

(2014) David L. Bentley   NATURE REVIEWS GENETICS

High-accuracyde novoassembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy

(2014) Qiushi Li et al.   NEW PHYTOLOGIST

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

(2014) Hong-Mei Zhang et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

A single-molecule long-read survey of the human transcriptome

(2013) Donald Sharon et al.   NATURE BIOTECHNOLOGY

Alternative cleavage and polyadenylation: extent, regulation and function

(2013) Ran Elkon et al.   NATURE REVIEWS GENETICS

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Characterization of the human ESC transcriptome by hybrid sequencing

(2013) K. F. Au et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Annotation of the Pearl Oyster Genome

(2013) Kazuyoshi Endo et al.   ZOOLOGICAL SCIENCE

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY