Discovery of multi-operon colinear syntenic blocks in microbial genomes

Operon concatenation is an ancient feature that restricts the potential to rearrange bacterial chromosomes

(2019) Gerrit Brandis et al.   MOLECULAR BIOLOGY AND EVOLUTION

SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier

(2019) Xiao Hu et al.   GigaScience

SonicParanoid: fast, accurate, and easy orthology inference

(2018) Salvatore Cosentino et al.   BIOINFORMATICS

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes

(2018) Dina Svetlitsky et al.   BIOINFORMATICS

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

(2017) Adrian M Altenhoff et al.   NUCLEIC ACIDS RESEARCH

Uptake of extracellular DNA: Competence induced pili in natural transformation ofStreptococcus pneumoniae

(2015) Sandra Muschiol et al.   BIOESSAYS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Protein Complexes Are under Evolutionary Selection to Assemble via Ordered Pathways

(2013) Joseph A. Marsh et al.   CELL

Type IV Pilin Proteins: Versatile Molecular Modules

(2012) Carmen L. Giltner et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

The type II secretion system: biogenesis, molecular architecture and mechanism

(2012) Konstantin V. Korotkov et al.   NATURE REVIEWS MICROBIOLOGY

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Efficient Computation of Approximate Gene Clusters Based on Reference Occurrences

(2011) Katharina Jahn   JOURNAL OF COMPUTATIONAL BIOLOGY

Methylglyoxal-infused honey mimics the anti-Staphylococcus aureus biofilm activity of manuka honey: Potential Implication in Chronic Rhinosinusitis

(2011) Joshua Jervis-Bardy et al.   LARYNGOSCOPE

i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets

(2011) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes

(2010) Christian Rödelsperger et al.   PLoS One

Detecting gene clusters under evolutionary constraint in a large number of genomes

(2009) Xu Ling et al.   BIOINFORMATICS

Computation of Median Gene Clusters

(2009) Sebastian Böcker et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Organization of the Bacterial Genome

(2008) Eduardo P.C. Rocha   Annual Review of Genetics

Evolution of genome architecture

(2008) Eugene V. Koonin   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY