Comparative Evaluation of Data Dependent and Data Independent Acquisition Workflows Implemented on an Orbitrap Fusion for Untargeted Metabolomics

Analysis of 1508 plasma samples by capillary flow data-independent acquisition profiles proteomics of weight loss and maintenance

(2019) Roland Bruderer et al.   MOLECULAR & CELLULAR PROTEOMICS

Untargeted LC/MS-based metabolic phenotyping (metabonomics/metabolomics): The state of the art

(2019) Helen Gika et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Blood metabolomics uncovers inflammation-associated mitochondrial dysfunction as a potential mechanism underlying ACLF

(2019) Richard Moreau et al.   JOURNAL OF HEPATOLOGY

Creating a Reliable Mass Spectral–Retention Time Library for All Ion Fragmentation-Based Metabolomics

(2019) Ipputa Tada et al.   Metabolites

Evaluation of the High-Field Orbitrap Fusion for Compound Annotation in Metabolomics

(2018) Pierre Barbier Saint Hilaire et al.   ANALYTICAL CHEMISTRY

Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies

(2018) David Broadhurst et al.   Metabolomics

From mass to metabolite in human untargeted metabolomics: Recent advances in annotation of metabolites applying liquid chromatography-mass spectrometry data

(2018) William J. Nash et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

SWATH data independent acquisition mass spectrometry for metabolomics

(2018) Ron Bonner et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Multiplexing data independent untargeted workflows for mycotoxins screening on a quadrupole-Orbitrap high resolution mass spectrometry platform

(2018) Wei Jia et al.   FOOD CHEMISTRY

Data acquisition workflows in liquid chromatography coupled to high resolution mass spectrometry-based metabolomics: Where do we stand?

(2017) François Fenaille et al.   JOURNAL OF CHROMATOGRAPHY A

Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation

(2017) Jeremy P. Koelmel et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Development of data-independent acquisition workflows for metabolomic analysis on a quadrupole-orbitrap platform

(2017) Juntuo Zhou et al.   TALANTA

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

(2017) Ivana Blaženović et al.   Journal of Cheminformatics

Development and Evaluation of a Parallel Reaction Monitoring Strategy for Large-Scale Targeted Metabolomics Quantification

(2016) Juntuo Zhou et al.   ANALYTICAL CHEMISTRY

Plasma Proteome Profiling to Assess Human Health and Disease

(2016) Philipp E. Geyer et al.   Cell Systems

Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

(2016) Chengjian Tu et al.   PLoS One

The Use of Variable Q1 Isolation Windows Improves Selectivity in LC–SWATH–MS Acquisition

(2015) Ying Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Optimized Analytical Procedures for the Untargeted Metabolomic Profiling of Human Urine and Plasma by Combining Hydrophilic Interaction (HILIC) and Reverse-Phase Liquid Chromatography (RPLC)–Mass Spectrometry

(2015) Kévin Contrepois et al.   MOLECULAR & CELLULAR PROTEOMICS

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

(2015) Hiroshi Tsugawa et al.   NATURE METHODS

Illuminating the dark matter in metabolomics: Fig. 1.

(2015) Ricardo R. da Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Autonomous Metabolomics for Rapid Metabolite Identification in Global Profiling

(2014) H. Paul Benton et al.   ANALYTICAL CHEMISTRY

Enhanced Detection and Identification in Metabolomics by Use of LC–MS/MS Untargeted Analysis in Combination with Gas-Phase Fractionation

(2014) Mónica Calderón-Santiago et al.   ANALYTICAL CHEMISTRY

Annotation of the human serum metabolome by coupling three liquid chromatography methods to high-resolution mass spectrometry

(2014) Samia Boudah et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications

(2014) Graham Mullard et al.   Metabolomics

Identification of xenobiotic metabolites from biological fluids using flow injection analysis high-resolution mass spectrometry and post-acquisition data filtering

(2014) Estelle Rathahao-Paris et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Versatile lipid profiling by liquid chromatography–high resolution mass spectrometry using all ion fragmentation and polarity switching. Preliminary application for serum samples phenotyping related to canine mammary cancer

(2013) H. Gallart-Ayala et al.   ANALYTICA CHIMICA ACTA

High resolution mass spectrometry based techniques at the crossroads of metabolic pathways

(2013) Christophe Junot et al.   MASS SPECTROMETRY REVIEWS

Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data

(2012) Steffen Neumann et al.   Metabolomics

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Characterization of The Human Tear Metabolome by LC–MS/MS

(2011) Liyan Chen et al.   JOURNAL OF PROTEOME RESEARCH

Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry

(2009) Haiying Zhang et al.   JOURNAL OF MASS SPECTROMETRY