Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective

Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota

(2020) Guillermo Blanco et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Two Novel α-L-Arabinofuranosidases from Bifidobacterium longum subsp. longum Belonging to Glycoside Hydrolase Family 43 Cooperatively Degrade Arabinan

(2019) Masahiro Komeno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Novel Genes and Metabolite Trends in Bifidobacterium longum subsp. infantis Bi-26 Metabolism of Human Milk Oligosaccharide 2′-fucosyllactose

(2019) Bryan Zabel et al.   Scientific Reports

Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis

(2019) Mikiyasu Sakanaka et al.   Science Advances

Degradation of plant arabinogalactan proteins by intestinal bacteria: characteristics and functions of the enzymes involved

(2019) Kiyotaka Fujita et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolism of biosynthetic oligosaccharides by human-derived Bifidobacterium breve UCC2003 and Bifidobacterium longum NCIMB 8809

(2019) Laura Ruiz-Aceituno et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

(2018) Silvia Arboleya et al.   BMC GENOMICS

Comparative genomics and genotype-phenotype associations in Bifidobacterium breve

(2018) Francesca Bottacini et al.   Scientific Reports

A Transposon Mutagenesis System for Bifidobacterium longum subsp. longum Based on an IS3 Family Insertion Sequence, ISBlo11

(2018) Mikiyasu Sakanaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation

(2018) Audrey Rivière et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota

(2017) Christian Milani et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Database resources of the National Center for Biotechnology Information

(2017) et al.   NUCLEIC ACIDS RESEARCH

Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach

(2016) Francesca Turroni et al.   ISME Journal

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596

(2016) Daniel Garrido et al.   Scientific Reports

Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides

(2015) Audrey Rivière et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment

(2015) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

(2015) A. O’Callaghan et al.   BMC GENOMICS

Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum

(2015) Andrei V. Chaplin et al.   PLoS One

Subspeciation of Bifidobacterium longum by multilocus approaches and amplified fragment length polymorphism: Description of B. longum subsp. suillum subsp. nov., isolated from the faeces of piglets

(2015) Emiko Yanokura et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

(2015) Christian Milani et al.   Scientific Reports

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Diversity, ecology and intestinal function of bifidobacteria

(2014) Francesca Bottacini et al.   Microbial Cell Factories

InCHlib – interactive cluster heatmap for web applications

(2014) Ctibor Škuta et al.   Journal of Cheminformatics

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A randomised, double-blind, placebo controlled cross-over study to determine the gastrointestinal effects of consumption of arabinoxylan-oligosaccharides enriched bread in healthy volunteers

(2012) Gemma E Walton et al.   Nutrition Journal

Novel Probiotic Bifidobacterium longum subsp. infantis CECT 7210 Strain Active against Rotavirus Infections

(2011) José Antonio Moreno Muñoz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prebiotic and Other Health-Related Effects of Cereal-Derived Arabinoxylans, Arabinoxylan-Oligosaccharides, and Xylooligosaccharides

(2011) Willem F. Broekaert et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

An Infant-associated Bacterial Commensal Utilizes Breast Milk Sialyloligosaccharides

(2011) David A. Sela et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

In Vitro Fermentation of Arabinoxylan-Derived Carbohydrates by Bifidobacteria and Mixed Fecal Microbiota

(2009) Helena Pastell et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov.

(2008) P. Mattarelli et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

(2008) D. A. Sela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA