Mapping the Salt Stress-Induced Changes in the Root miRNome in Pokkali Rice

Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress

(2018) Yong-Fang Li et al.   BMC GENOMICS

Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

(2018) Worawat Yuenyong et al.   BMC PLANT BIOLOGY

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Overexpression of miR529a confers enhanced resistance to oxidative stress in rice (Oryza sativa L.)

(2017) Erkui Yue et al.   PLANT CELL REPORTS

Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana

(2017) Javier Canales et al.   PLANT JOURNAL

MicroRNA156 improves drought stress tolerance in alfalfa ( Medicago sativa ) by silencing SPL13

(2017) Muhammad Arshad et al.   PLANT SCIENCE

Ascorbic Acid-A Potential Oxidant Scavenger and Its Role in Plant Development and Abiotic Stress Tolerance

(2017) Nudrat A. Akram et al.   Frontiers in Plant Science

Identification and comparative analysis of microRNAs from tomato varieties showing contrasting response to ToLCV infections

(2017) Anita Tripathi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Plant microRNAs: key regulators of root architecture and biotic interactions

(2016) Jean-Malo Couzigou et al.   NEW PHYTOLOGIST

Phosphate-dependent root system architecture responses to salt stress

(2016) Dorota Kawa et al.   PLANT PHYSIOLOGY

Salt Stress Affects the Redox Status of Arabidopsis Root Meristems

(2016) Keni Jiang et al.   Frontiers in Plant Science

Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex

(2016) Zhengxi Sun et al.   Frontiers in Plant Science

The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits

(2015) Hai Wang et al.   Molecular Plant

MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots

(2015) Ramiro E. Rodriguez et al.   PLANT CELL

The role of miR156/SPLs modules in Arabidopsis lateral root development

(2015) Niu Yu et al.   PLANT JOURNAL

Discovery of Conservation and Diversification of Genes by Phylogenetic Analysis based on Global Genomes

(2015) Xudong Zhu et al.   Plant Genome

Abiotic stress responses in plants: roles of calmodulin-regulated proteins

(2015) Amardeep S. Virdi et al.   Frontiers in Plant Science

Soil salinity: A serious environmental issue and plant growth promoting bacteria as one of the tools for its alleviation

(2015) Pooja Shrivastava et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Transcripts and MicroRNAs Responding to Salt Stress in Musa acuminata Colla (AAA Group) cv. Berangan Roots

(2015) Wan Sin Lee et al.   PLoS One

Glyoxalase and Methylglyoxal as Biomarkers for Plant Stress Tolerance

(2014) Charanpreet Kaur et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Overexpression of a miR393-Resistant Form of Transport Inhibitor Response Protein 1 (mTIR1) Enhances Salt Tolerance by Increased Osmoregulation and Na+ Exclusion in Arabidopsis thaliana

(2014) Zhehao Chen et al.   PLANT AND CELL PHYSIOLOGY

Capturing Arabidopsis Root Architecture Dynamics with ROOT-FIT Reveals Diversity in Responses to Salinity

(2014) M. M. Julkowska et al.   PLANT PHYSIOLOGY

Mechanism of Salinity Tolerance in Plants: Physiological, Biochemical, and Molecular Characterization

(2014) Bhaskar Gupta et al.   International Journal of Genomics

Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa)

(2013) Xiaoxia Ma et al.   BMC GENOMICS

miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent manner

(2013) Jian Song et al.   BMC PLANT BIOLOGY

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Identification of tissue-preferential expression patterns of rice miRNAs

(2013) Deepti Mittal et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

miR396 affects mycorrhization and root meristem activity in the legumeMedicago truncatula

(2013) Jérémie Bazin et al.   PLANT JOURNAL

Global identification of miRNAs and targets in Populus euphratica under salt stress

(2013) Bosheng Li et al.   PLANT MOLECULAR BIOLOGY

Hydrogen peroxide is involved in the regulation of rice (Oryza sativa L.) tolerance to salt stress

(2012) Xiaomin Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Repression of early lateral root initiation events by transient water deficit in barley and maize

(2012) A. Babe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress

(2012) N. Kinoshita et al.   PLANT CELL

“And yet it moves”: Cell-to-cell and long-distance signaling by plant microRNAs

(2012) Esther Marín-González et al.   PLANT SCIENCE

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Overexpression of the mitochondrial PPR40 gene improves salt tolerance in Arabidopsis

(2011) Laura Zsigmond et al.   PLANT SCIENCE

Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis

(2011) Surya Kant et al.   PLoS Genetics

MicroRNA-mediated signaling involved in plant root development

(2010) Yijun Meng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

osa-MIR393: a salinity- and alkaline stress-related microRNA gene

(2010) Peng Gao et al.   MOLECULAR BIOLOGY REPORTS

Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress

(2010) Sujay Paul et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Redox homeostasis, antioxidant defense, and methylglyoxal detoxification as markers for salt tolerance in Pokkali rice

(2010) Hattem El-Shabrawi et al.   PROTOPLASMA

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Mild salinity stimulates a stress-induced morphogenic response in Arabidopsis thaliana roots

(2009) G. Zolla et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development

(2009) Eun Kyung Yoon et al.   NUCLEIC ACIDS RESEARCH

SIK1/SOS2 networks: decoding sodium signals via calcium-responsive protein kinase pathways

(2009) Alejandro Mario Bertorello et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Functions of the ERF transcription factor family in plants

(2008) Zhao-Shi Xu et al.   Botany

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

(2008) Yujie Fang et al.   MOLECULAR GENETICS AND GENOMICS

ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance inArabidopsis thaliana

(2008) Hikaru Sakamoto et al.   PLANT JOURNAL

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA