Impact of ex vivo Sample Handling on DNA Methylation Profiles in Human Cord Blood and Neonatal Dried Blood Spots

Cytosine modifications exhibit circadian oscillations that are involved in epigenetic diversity and aging

(2018) Gabriel Oh et al.   Nature Communications

Characterizing the hypomethylated DNA methylation profile of nucleated red blood cells from cord blood

(2016) Olivia M de Goede et al.   Epigenomics

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

(2015) Kamal Kishore et al.   BMC BIOINFORMATICS

Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments

(2014) Egor Dolzhenko et al.   BMC BIOINFORMATICS

Optimized DNA extraction from neonatal dried blood spots: application in methylome profiling

(2014) Akram Ghantous et al.   BMC BIOTECHNOLOGY

The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array

(2013) JiHoon E Joo et al.   BMC BIOTECHNOLOGY

High quality methylome-wide investigations through next-generation sequencing of DNA from a single archived dry blood spot

(2013) Karolina A. Aberg et al.   Epigenetics

DNA methylome profiling using neonatal dried blood spot samples: A proof-of-principle study

(2013) Mads Vilhelm Hollegaard et al.   MOLECULAR GENETICS AND METABOLISM

A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics

(2013) Qiang Song et al.   PLoS One

Analysing and interpreting DNA methylation data

(2012) Christoph Bock   NATURE REVIEWS GENETICS

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

(2012) Kasper D Hansen et al.   GENOME BIOLOGY

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Reference Ranges for Blood Concentrations of Nucleated Red Blood Cells in Neonates

(2010) Robert D. Christensen et al.   Neonatology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Whole genome microarray analysis, from neonatal blood cards

(2009) Jill Hardin et al.   BMC GENETICS